View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_16 (Length: 240)
Name: NF10166_low_16
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 47582257 - 47582034
Alignment:
| Q |
2 |
gggaggcaccaagcaccgccatatactttttggttttctgtgaggttcactgacttgacagcaaattttgcagaagcatttccagtctcccttctcaaat |
101 |
Q |
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| T |
47582257 |
gggaggcaccaagcaccgccatatactttttggttttctgtgaggttcactgacttgacagcaaattttgcagaagcatttccagtctcccttctcaaat |
47582158 |
T |
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| Q |
102 |
cgtttaacatatcccaaagaatgttgttgaagcgcccaacgtcacccacataatccttttcgttcatgaaattgatttctggacttttctccacagtggt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582157 |
cgtttaacatatcccaaagaatgttgttgaagcgcccaacgtcacccacataatccttttcgttcatgaaattgatttctggacttttctccacagtggt |
47582058 |
T |
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| Q |
202 |
aaagaagcgacgatcagaatagtg |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
47582057 |
aaagaagcgacgatcagaatagtg |
47582034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 47572541 - 47572338
Alignment:
| Q |
20 |
ccatatactttttggttttctgtgaggttcactgacttgacagcaaattttgcagaagcatttccagtctcccttctcaaatcgtttaacatatcccaaa |
119 |
Q |
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||||||| ||||||||| ||||||| ||||||||||| |||| |||||| ||||||||||| | | ||| ||||||||||||| ||||||||||| | |
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| T |
47572541 |
ccatatagtttttggttgtctgtgatattcactgacttatcagccaattttccagaagcatttgctgcctcgtttctcaaatcgttcaacatatcccaga |
47572442 |
T |
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| Q |
120 |
gaatgttgttgaagcgcccaacgtcacccacataatccttttcgttcatgaaattgatttctggacttttctccacagtggtaaagaagcgacgatcaga |
219 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |||||| ||||| ||| | ||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
47572441 |
gaatgttgttgaagcgtccaacttcacccacataatctttttcgctcatgtaataaagttctggacttttctccacaatggaaaagattcgacgatcaga |
47572342 |
T |
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| Q |
220 |
atag |
223 |
Q |
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|||| |
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| T |
47572341 |
atag |
47572338 |
T |
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