View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_18 (Length: 236)
Name: NF10166_low_18
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 45142892 - 45142710
Alignment:
| Q |
54 |
ttagagtttcaaacaatttccaagcatttgttttttgtagaccgtgttaaacacttttccactctagaagctggatgaaactataaacacgagaagttga |
153 |
Q |
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| T |
45142892 |
ttagagtatcaaacaatttccaagcatttgtttgttgtagaccgtgttaaacacttttccactctagaagccggatgaaactataaacacgagaagttga |
45142793 |
T |
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| Q |
154 |
aatactcactaataggatctcgaaatgggccacaagaaccattctcaatctgtttctgcatcacttatctctccaggctgatt |
236 |
Q |
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| T |
45142792 |
aatactcactaataggatctcgaaatgggccacaagaaccattctcaatctgtttctgcatcacttatctctccaggctgatt |
45142710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45142983 - 45142927
Alignment:
| Q |
1 |
aagacagtcatttaatcagtgttaattcaaaaataaacaagagaaaatgaatattag |
57 |
Q |
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| T |
45142983 |
aagacagtcatttaatcagtgttaattcaaaaataaacaagagaaaatgaatattag |
45142927 |
T |
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