View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_low_19 (Length: 235)

Name: NF10166_low_19
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_low_19
NF10166_low_19
[»] chr1 (2 HSPs)
chr1 (151-227)||(16674886-16674962)
chr1 (137-220)||(17743490-17743573)
[»] chr8 (1 HSPs)
chr8 (13-84)||(31008778-31008849)


Alignment Details
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 16674886 - 16674962
Alignment:
Q  151 actttgagttccactgtgagtattatagaacaccaccgccaaatttgtttcaaaggagtatttgcaaaacgttttaa 227  Q
    ||||||| ||||| ||||||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||||    
T  16674886 actttgaattccagtgtgagtattataaaacaccaacaccaaatttgttttaaaggagtaattgcaaaacgttttaa 16674962  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 17743573 - 17743490
Alignment:
Q  137 tttgacgcgccaaaactttgagttccactgtgagtattatagaacaccaccgccaaatttgtttcaaaggagtatttgcaaaac 220  Q
    ||||||||||| || |||||| || ||  ||||||||||| |||||| | || ||||||||||| ||||||||| || ||||||    
T  17743573 tttgacgcgcccaatctttgaatttcagcgtgagtattattgaacactaacggcaaatttgttttaaaggagtaattacaaaac 17743490  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 31008778 - 31008849
Alignment:
Q  13 attcttatatacaggaggcatgcnnnnnnnaatggcagtaagttctttcaacttcatatgtaaacagtttaa 84  Q
    |||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||    
T  31008778 attcttatatacaggaggcatgctttttttaatggcagtaagtactttcaacttcatatgtaaacagtttaa 31008849  T

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