View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_low_21 (Length: 228)

Name: NF10166_low_21
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_low_21
NF10166_low_21
[»] chr1 (5 HSPs)
chr1 (1-228)||(47582518-47582745)
chr1 (58-201)||(47570697-47570847)
chr1 (160-199)||(47572862-47572901)
chr1 (33-86)||(47573217-47573269)
chr1 (58-114)||(47566249-47566304)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47582745 - 47582518
Alignment:
Q  1 aacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttcattagagggacagg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47582745 aacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttcattagagggacagg 47582646  T
Q  101 aaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgacagtaatatatggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47582645 aaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgacagtaatatatggt 47582546  T
Q  201 atgattacattgatgtcttattatgtca 228  Q
    ||||||||||||||||||||||||||||    
T  47582545 atgattacattgatgtcttattatgtca 47582518  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 47570847 - 47570697
Alignment:
Q  58 taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttcaattcttgttctc------ccaagttcttacagaag- 150  Q
    |||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||  ||||||      ||||||| || ||||||     
T  47570847 taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttcagttcacgttctcaatgtaccaagttattgcagaaga 47570749  T
Q  151 -atatatcttttgctagatatagtaatcatgggttgacagtaatatatggta 201  Q
     |||||||| |||||||||||||||  |||||||||||||| ||||||||||    
T  47570748 tatatatctcttgctagatatagtatccatgggttgacagtgatatatggta 47570697  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 47572901 - 47572862
Alignment:
Q  160 ttgctagatatagtaatcatgggttgacagtaatatatgg 199  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  47572901 ttgctagatatagtagtcatgggttgacagtaatatatgg 47572862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
Q  33 aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc 86  Q
    |||||||| ||||||||||| ||  |||||||||||||||||| ||||||||||    
T  47573269 aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc 47573217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
Q  58 taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt 114  Q
    |||||||||||| ||||| |||| |||||||| |||||| | |||||||||||||||    
T  47566304 taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt 47566249  T

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