View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10166_low_22 (Length: 226)
Name: NF10166_low_22
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 52885585 - 52885719
Alignment:
| Q |
1 |
cccgctttcttataaactgcgccgaccaggaactggactctttgggtggggggattaattaataataaaattaaattatctactaagtgtctttgcagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52885585 |
cccgctttcttataaactgcgccgaccaggaactggactctttgggtggggggattaattaataataaaattaaattatctactaagtgtctttgcaatt |
52885684 |
T |
|
| Q |
101 |
gcgcgtagatgtattgtttcgcgccaaaattcatg |
135 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52885685 |
gcgcgtagatgtattatttcgcgccaaaattcatg |
52885719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 52885755 - 52885846
Alignment:
| Q |
135 |
gacaagatctagcatatgaattgaataattaatttatgtttattactnnnnnnnctaatttatgtttaataaatttgatttagaagtaaatc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
52885755 |
gacaagatctagcatatgaattgaatgattaatttatgtttattactaaaaaaactaatttatgtttagtaaatttgatttaaaagtaaatc |
52885846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 52885949 - 52886024
Alignment:
| Q |
57 |
aattaataataaaattaaattatctactaagtgtctttgcagttgcgcgtagatgtat-tgtttcgcgccaaaatt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
52885949 |
aattaataataaaattaaattatctactaactgtctttgcagttgcgtatagatgtatctgattcgcgccaaaatt |
52886024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 52886065 - 52886106
Alignment:
| Q |
135 |
gacaagatctagcatatgaattgaataattaatttatgttta |
176 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52886065 |
gacaagatctagcatatgaattgtataattaatttatgttta |
52886106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University