View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_4 (Length: 386)
Name: NF10166_low_4
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 28948918 - 28948549
Alignment:
| Q |
1 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948918 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaag |
28948819 |
T |
|
| Q |
101 |
gcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948818 |
gcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagata |
28948719 |
T |
|
| Q |
201 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatggcatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948718 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatggcatcct |
28948619 |
T |
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| Q |
301 |
catagcgcttgatgtactcagacttttcaccttcactggcttccagccgcttggtcagtaaggtcatttt |
370 |
Q |
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| T |
28948618 |
catagcgtttgatgtactcagacttttcaccttcactggcttccagccgcttggtcagtaaggtcatttt |
28948549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 43015191 - 43015272
Alignment:
| Q |
114 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
195 |
Q |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
43015272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 34830063 - 34829870
Alignment:
| Q |
1 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830063 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgaaggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaag |
34829964 |
T |
|
| Q |
101 |
gcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
194 |
Q |
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| T |
34829963 |
gcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
34829870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 201 - 370
Target Start/End: Complemental strand, 34814073 - 34813904
Alignment:
| Q |
201 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatggcatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34814073 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatggcatcct |
34813974 |
T |
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| Q |
301 |
catagcgcttgatgtactcagacttttcaccttcactggcttccagccgcttggtcagtaaggtcatttt |
370 |
Q |
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| T |
34813973 |
catagcgattgatgtactcagacttttcaccttcactggcttccagccgcttggtcagtaaggtcatttt |
34813904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 30505888 - 30505976
Alignment:
| Q |
84 |
tacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaaga |
172 |
Q |
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| T |
30505888 |
tacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaaga |
30505976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4235674 - 4235868
Alignment:
| Q |
1 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||| || || || |||||||| |||| || || ||||||||| | || ||||||||||||||| | | |
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| T |
4235674 |
aaacaagatggcacaaaacagggaaaactagagcaattttttccaatggtgttgtgaagggatttaagaagatattggtactctacaccaactattgcaa |
4235773 |
T |
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| Q |
101 |
gcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
195 |
Q |
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| || || |||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| |||||||| |
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| T |
4235774 |
agatggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaaga |
4235868 |
T |
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