View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10166_low_5 (Length: 383)
Name: NF10166_low_5
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 4922704 - 4922352
Alignment:
| Q |
13 |
cagatgcatcacccttattaccctcattccctattccattcatatcttcagctccatttccagcttcctcttgagattgaatttccgtcaattgcaacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
4922704 |
cagatgcatcacccttattaccctcattccctattccattcatatcttcagctccatttccagcttcctcttgagattgaatttccgccgattgcaacct |
4922605 |
T |
|
| Q |
113 |
ccaatcaatttccttcatattgtcatctataaaggccgccaggtcattgagttcattcacattcacatcctcggtacgatattgtccagtactaaatatt |
212 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
4922604 |
ccaatcaatttccttcagattgtcatttataaaggccgccaggtcattaagttcattcacattcacatcctcgacacgatattgtctagtactaaatact |
4922505 |
T |
|
| Q |
213 |
ttagtaataaattgggcgaattcattcttcttgtttgcctccatttgtttcttcaacaacaattgagatttcgctatactttggtttaagtaagctgtca |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
4922504 |
ttagtaataaatagggcgaattcattcttcttgtttgcctccatttgtttcctcaacagcaattgagattttgcaatactttggttcaagtaagctgtca |
4922405 |
T |
|
| Q |
313 |
aatccaccatatttttgcttcgttcgatttcaggcaagtgtaggaacttggat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4922404 |
aatccaccatatttttgcttcgttcgatttcaggcaagtgtaggaacttggat |
4922352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 21546325 - 21546403
Alignment:
| Q |
255 |
atttgtttcttcaacaacaattgagatttcgctatactttggtttaagtaagctgtcaaatccaccatatttttgcttc |
333 |
Q |
| |
|
||||||||| |||||||| |||| |||||| |||| |||||||||||||| | |||||||||| | |||||||||| |
|
|
| T |
21546325 |
atttgtttcctcaacaactattgggatttcactatgctttggtttaagtagcccttcaaatccactaactttttgcttc |
21546403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University