View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_low_6 (Length: 369)

Name: NF10166_low_6
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_low_6
NF10166_low_6
[»] chr1 (3 HSPs)
chr1 (18-355)||(25796993-25797330)
chr1 (250-355)||(25808967-25809072)
chr1 (250-355)||(25815966-25816071)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 25796993 - 25797330
Alignment:
Q  18 acaagaagtactcaaatcaaacgataacaaaatctaaggatcactcctatagtcacaagtattagtagaaggcgatccatagaaacattggcccaaatta 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25796993 acaagaagtactcaaatcaaacgataacaaaatcgaaggatcactcctatagtcacaagtattagtagaagccgatccatagaaacattggcccaaatta 25797092  T
Q  118 attaaatacaaagcaatcaattttacatttcagcacctcataaaaggaaattaatctcacaacagaaaaaaccaaaccaaacatggtgaataatacaggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25797093 attaaatacaaagcaatcaattttacatttcagcacctcataaaaggaaattaatctcacaacagaaaaaaccaaaccaaacatagtgaataatacaggt 25797192  T
Q  218 aacttatgcccctgcatgcttctaacaatcttatcttaattttcaatgcttcccaagagccaaagcagacatcacaaccaacaccattaaaacaaccaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25797193 aacttatgcccctgcatgcttctaacaatcttatcttaattttcaatgcttcccaagagccaaagcagacatcacaaccaacaccattaaaacaaccaca 25797292  T
Q  318 gcaataaaacatgacacaactgctccacttgtctgtgc 355  Q
    | ||| ||  ||| ||||||||| |||||||| |||||    
T  25797293 gtaatgaatgatgccacaactgcaccacttgtttgtgc 25797330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 25808967 - 25809072
Alignment:
Q  250 atcttaattttcaatgcttcccaagagccaaagcagacatcacaaccaacaccattaaaacaaccacagcaataaaacatgacacaactgctccacttgt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||| ||| ||||||||||||||    
T  25808967 atcttaattttcaatgcttcccaagagccaaagcagacatcacaaccaacacaattaaaacaaccacagtaataaatgatgccactactgctccacttgt 25809066  T
Q  350 ctgtgc 355  Q
    ||||||    
T  25809067 ctgtgc 25809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 25815966 - 25816071
Alignment:
Q  250 atcttaattttcaatgcttcccaagagccaaagcagacatcacaaccaacaccattaaaacaaccacagcaataaaacatgacacaactgctccacttgt 349  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| ||||||  ||| ||| ||||||||||||||    
T  25815966 atcttaattttcaatgcttcccaatagccaaagcagacatcacaaccaacaagattaaaacaaccacagtaataaatgatgccactactgctccacttgt 25816065  T
Q  350 ctgtgc 355  Q
    ||||||    
T  25816066 ctgtgc 25816071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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