View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_9 (Length: 338)
Name: NF10166_low_9
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 51845462 - 51845146
Alignment:
| Q |
18 |
acactgcttgtcaatttcatatcctggctacaacactaaatatttataatacactaaatttccaccagggactaaacaaggaacaatgaaatgacatttg |
117 |
Q |
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| T |
51845462 |
acactgcttgtcaatttcatatcctggctacaatactaaatatttataatacactaaatttccaccagggactaaacaaggaacaatgaaatgccatttg |
51845363 |
T |
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| Q |
118 |
aaataaaaaactagaaatctatatgtcctttgttctttgtgactaagcttttatgtgatcattaacatcatatcttagtttactattttaaccacccgtt |
217 |
Q |
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| T |
51845362 |
aaataaaaa-ctagaaatctatatgtcctttgttctt---gactaagcttttatgtgatcattaacatcatatcttagtttactattttaaccacccgtt |
51845267 |
T |
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| Q |
218 |
gaatatttaggagggggaatagaaaagcaataaacattttcattcccatgctcaactaggatagtgtttgtttcttatcaaaaggagtatgtaaccttaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845266 |
gaatatttaggagggggaatagaaaagcaataaacgttttcattcccatgctcaactaggatagtgtttgtttcttatcaaaaggagtatgtaaccttat |
51845167 |
T |
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| Q |
318 |
tttcctgctccaaaaaacaac |
338 |
Q |
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| T |
51845166 |
ttccctgctccaaaaaacaac |
51845146 |
T |
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