View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_high_17 (Length: 245)
Name: NF10167_high_17
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
| Q |
133 |
tatacactctggccaaaaacatataagttacgcataacat |
172 |
Q |
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| T |
46306624 |
tatacactctggccaaaaacatataagttacgcataacat |
46306663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 46024997 - 46024953
Alignment:
| Q |
42 |
tttgtcttttaggaaccaacatccatttgataatcacgacaagaa |
86 |
Q |
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| T |
46024997 |
tttgtcttttaggaaccaacattcatttgataatcaccacaagaa |
46024953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 46263194 - 46263238
Alignment:
| Q |
42 |
tttgtcttttaggaaccaacatccatttgataatcacgacaagaa |
86 |
Q |
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| T |
46263194 |
tttgtcttttaggaaccaacattcatttgataatcaccacaagaa |
46263238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
| Q |
83 |
agaagattattattagtaaacaacatgcagaaagaagttgagtctttata |
132 |
Q |
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| T |
46302775 |
agaagattatta--aataaccaacatgcagaaagaagttgagtctttata |
46302822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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