View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_high_2 (Length: 562)

Name: NF10167_high_2
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_high_2
NF10167_high_2
[»] chr7 (3 HSPs)
chr7 (1-486)||(34905590-34906075)
chr7 (482-546)||(34902811-34902875)
chr7 (482-546)||(3626138-3626202)
[»] chr8 (1 HSPs)
chr8 (482-546)||(28522457-28522521)
[»] chr6 (5 HSPs)
chr6 (482-546)||(513274-513338)
chr6 (482-546)||(8370330-8370394)
chr6 (482-546)||(15137842-15137906)
chr6 (482-546)||(34844535-34844599)
chr6 (482-546)||(2851675-2851739)
[»] chr5 (1 HSPs)
chr5 (482-546)||(39175760-39175824)
[»] chr4 (4 HSPs)
chr4 (482-546)||(34132843-34132907)
chr4 (482-546)||(53912632-53912696)
chr4 (496-546)||(29581355-29581405)
chr4 (483-536)||(21180890-21180943)
[»] chr3 (1 HSPs)
chr3 (482-546)||(35203749-35203813)
[»] chr2 (4 HSPs)
chr2 (482-546)||(21467195-21467259)
chr2 (482-546)||(24840333-24840397)
chr2 (482-546)||(26647498-26647562)
chr2 (482-546)||(33224843-33224907)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 34906075 - 34905590
Alignment:
Q  1 ttgcaatcacattgtgatccttgaagatgcataaatttatggtcaagaacagctgatgcggccacaattacggtcgctgaggcatcaaaaacctaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906075 ttgcaatcacattgtgatccttgaagatgcataaatttatggtcaagaacagctgatgcggccacaattacggtcgctgaggcatcaaaaacctaacatt 34905976  T
Q  101 gccgtcgtggactatctttttgaaatcttggttataaaacataagaaagcttatgtttattgaatagcataactggtttctatgttgatatttgcagaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905975 gccgtcgtggactatctttttgaaatcttggttataaaacataagaaagcttatgtttattgaatagcataactggtttctatgttgatatttgcagaca 34905876  T
Q  201 gggaagcctcttatggtgttaagtactgatctcaactcaagagcagatttcttctggtaagttttatggcttcaaatttgactgttttgcagatgcacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905875 gggaagcctcttatggtgttaagtactgatctcaactcaagagcagatttcttctggtaagttttatggcttcaaatttgactgttttgcagatgcacaa 34905776  T
Q  301 aatttacttttgatgtttgcattacttagcaaccttaactaacattgcatcagctaagttcaggataataatagactatatttttatctaattcacaann 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34905775 aatttacttttgatgtttgcattacttagcaaccttaactaacattgcatcagctaagttcaggataataatagactatatttttatctaattcacaatt 34905676  T
Q  401 nnnnngctcagtgttcttttgttcttgtttaaagtgctctttatacaacacactagttttatagtgtgtattgaaagtttggaatt 486  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905675 tttttgctcagtgttcttttgttcttgtttaaagtgctctttatacaacacactagttttatagtgtgtattgaaagtttggaatt 34905590  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 34902875 - 34902811
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34902875 gaatttgtgtagattataaatttataattctaaagcataataatttggtgtataacattttgtgt 34902811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 3626138 - 3626202
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3626138 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 3626202  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 28522457 - 28522521
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28522457 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 28522521  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 513274 - 513338
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  513274 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 513338  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 8370330 - 8370394
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8370330 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 8370394  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 15137906 - 15137842
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15137906 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 15137842  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 34844535 - 34844599
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34844535 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 34844599  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 2851739 - 2851675
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||  ||||||||    
T  2851739 gaatttgtgtagattttaaatttataattctaaagcataataattcggtgtataactttttgtgt 2851675  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 39175824 - 39175760
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39175824 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 39175760  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 34132907 - 34132843
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34132907 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 34132843  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 53912696 - 53912632
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53912696 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 53912632  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 29581355 - 29581405
Alignment:
Q  496 tataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29581355 tataaatttataattctaaagcataataatttggtgtataattttttgtgt 29581405  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 21180890 - 21180943
Alignment:
Q  483 aatttgtgtagaatataaatttataattctaaagcataataatttggtgtataa 536  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  21180890 aatttgtgtagattataaatttataattctaaagtataataatttggtgtataa 21180943  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 35203749 - 35203813
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35203749 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 35203813  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 21467259 - 21467195
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21467259 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 21467195  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 24840333 - 24840397
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24840333 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 24840397  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 26647498 - 26647562
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26647498 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgt 26647562  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 33224907 - 33224843
Alignment:
Q  482 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtataatattttgtgt 546  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  33224907 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtattacattttgtgt 33224843  T

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