View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_high_4 (Length: 438)

Name: NF10167_high_4
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_high_4
NF10167_high_4
[»] chr1 (5 HSPs)
chr1 (1-415)||(1780104-1780518)
chr1 (325-414)||(18049706-18049795)
chr1 (13-70)||(1780505-1780562)
chr1 (25-66)||(50404189-50404230)
chr1 (16-68)||(32441607-32441659)
[»] scaffold1372 (1 HSPs)
scaffold1372 (13-69)||(105-161)
[»] scaffold1308 (1 HSPs)
scaffold1308 (13-69)||(1411-1467)
[»] chr4 (1 HSPs)
chr4 (16-70)||(29508783-29508837)
[»] chr5 (1 HSPs)
chr5 (23-72)||(34178222-34178271)
[»] chr7 (2 HSPs)
chr7 (28-72)||(25119870-25119914)
chr7 (28-76)||(32786921-32786969)
[»] chr6 (1 HSPs)
chr6 (30-70)||(7509630-7509670)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 1780518 - 1780104
Alignment:
Q  1 tagcaagacccttttctctttttggaatccttaacatgcacccttagggcacaagttagcaagaccctttattataaaatttacatgtcatattggcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780518 tagcaagacccttttctctttttggaatccttaacatgcacccttagggcacaagttagcaagaccctttattataaaatttacatgtcatattggcact 1780419  T
Q  101 tccacatccacccaaaatagtttctcatttggaccttaactaaactagcctagcacttagctttatcctgatttaagggatcttttggaaaaatgaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1780418 tccacatccacccaaaatagtttctcatttggaccttaactaaactagcctagcacttagctttatcctgatttaatggatcttttggaaaaatgaaaat 1780319  T
Q  201 gcaatgccgtatttgttcttgtacaatttttaactattttcatataactttgattgcatttttgttagatacattttgaagctttagtgtactttacttt 300  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780318 gcaatgccgtatctgttcttgtacaatttttaactatttgcatataactttgattgcatttttgttagatacattttgaagctttagtgtactttacttt 1780219  T
Q  301 ttattgccttggttttgtgtcagaactcaaactgattgattttgttatatttttgcgcagaactggtggacaagagaatttcttccattgtaataagtgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1780218 ttattgccttggttttgtgtcagaactcaaactgattgattttgttatatctttgcgcagaactggcggacaagagaatttcttccattgtaataagtgt 1780119  T
Q  401 ggtaagtgatatcac 415  Q
    |||||||||||||||    
T  1780118 ggtaagtgatatcac 1780104  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 414
Target Start/End: Complemental strand, 18049795 - 18049706
Alignment:
Q  325 actcaaactgattgattttgttatatttttgcgcagaactggtggacaagagaatttcttccattgtaataagtgtggtaagtgatatca 414  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||| || |||  ||||||||||||||||||||||||||||||||||||    
T  18049795 actcaaaccgattgattttgatatatttttgcacagaactggtggccaggagtctttcttccattgtaataagtgtggtaagtgatatca 18049706  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1780562 - 1780505
Alignment:
Q  13 tttctctttttggaatccttaacatgcacccttagggcacaagttagcaagacccttt 70  Q
    |||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  1780562 tttctccttttggaatctttaacatgtgcccttagggcacaagttagcaagacccttt 1780505  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 50404230 - 50404189
Alignment:
Q  25 gaatccttaacatgcacccttagggcacaagttagcaagacc 66  Q
    ||||||||||||||  |||||||||||||||||| |||||||    
T  50404230 gaatccttaacatgtgcccttagggcacaagttaacaagacc 50404189  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 32441659 - 32441607
Alignment:
Q  16 ctctttttggaatccttaacatgcacccttagggcacaagttagcaagaccct 68  Q
    |||||| ||||| ||||||||||  |||| ||||||||||||| |||||||||    
T  32441659 ctctttgtggaaaccttaacatgtgccctaagggcacaagttaacaagaccct 32441607  T

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Target: scaffold1372 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 105 - 161
Alignment:
Q  13 tttctctttttggaatccttaacatgcacccttagggcacaagttagcaagaccctt 69  Q
    ||||| |||||||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  105 tttctatttttggattccttaacatgtaccctaagggcataagttagcacgaccctt 161  T

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Target: scaffold1308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1411 - 1467
Alignment:
Q  13 tttctctttttggaatccttaacatgcacccttagggcacaagttagcaagaccctt 69  Q
    ||||| |||||||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  1411 tttctatttttggattccttaacatgtaccctaagggcataagttagcacgaccctt 1467  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 29508783 - 29508837
Alignment:
Q  16 ctctttttggaatccttaacatgcacccttagggcacaagttagcaagacccttt 70  Q
    ||||||||||  |||||||||||  |||||||||||||||||| || ||||||||    
T  29508783 ctctttttgggttccttaacatgtgcccttagggcacaagttaacacgacccttt 29508837  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 34178222 - 34178271
Alignment:
Q  23 tggaatccttaacatgcacccttagggcacaagttagcaagaccctttat 72  Q
    ||||||||||||||||  |||||||||||||| ||| || ||||||||||    
T  34178222 tggaatccttaacatgtgcccttagggcacaaattaacatgaccctttat 34178271  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 25119870 - 25119914
Alignment:
Q  28 tccttaacatgcacccttagggcacaagttagcaagaccctttat 72  Q
    |||||||||||  |||||||||||||||||| || ||||||||||    
T  25119870 tccttaacatgtgcccttagggcacaagttaacatgaccctttat 25119914  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 32786921 - 32786969
Alignment:
Q  28 tccttaacatgcacccttagggcacaagttagcaagaccctttattata 76  Q
    |||||||||||  ||||||||||||||||||||| ||||| || |||||    
T  32786921 tccttaacatgtgcccttagggcacaagttagcatgacccattgttata 32786969  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 7509670 - 7509630
Alignment:
Q  30 cttaacatgcacccttagggcacaagttagcaagacccttt 70  Q
    |||||||||  ||||||||||||||||||||| ||||||||    
T  7509670 cttaacatgtgcccttagggcacaagttagcatgacccttt 7509630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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