View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_high_5 (Length: 352)
Name: NF10167_high_5
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 34543933 - 34544113
Alignment:
| Q |
38 |
gtttgttcaatttttggtgaaaaatacctagttacgagtctaacctccattggtagcctccgcttgctcctccatcttcactaacatcatccatcaacgc |
137 |
Q |
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| T |
34543933 |
gtttgttcaatttttggtgaaaaatacctagttacgagtttaacctccattggtagcctccgcttgctcctccaccttcactaacatcatccatcaacgc |
34544032 |
T |
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| Q |
138 |
gtctatatttttcttagagatatgttgttcaaattatctcgcgttcagcttctcagttgcttatctcaaatccgtgtttag |
218 |
Q |
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| T |
34544033 |
gtctatatttttcttagagatatgttgttcaaattatctcgcattcagcttctcagttgctcatctcaaatccgtgtttag |
34544113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 34544162 - 34544237
Alignment:
| Q |
266 |
gtattagtgggtcatctcatattcatctacatgaccaactcatatttgtttcaattcatttttaagtttcgttctt |
341 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
34544162 |
gtattagttggtcatctcatattcatctatatgaccaactcatatttgtttcaattcatttctaggtttcgttctt |
34544237 |
T |
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