View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_high_6 (Length: 350)
Name: NF10167_high_6
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 325
Target Start/End: Complemental strand, 10140265 - 10139978
Alignment:
| Q |
32 |
attacctaatcaacaattaatattagattgaatctcaaaaattaaggttaatagtcattcaaaacataaatcgatttatgaacattcataaatacataaa |
131 |
Q |
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| T |
10140265 |
attacctaatcaactattaatattagatcaagttccaaaaattaaggtcaatagtcattcaaaacataaatcgatttatagacattcataaatacataaa |
10140166 |
T |
|
| Q |
132 |
agtaccaagatcaaatacatttaaccctttaataaggtaggggaaaatatatttaatccttcaatataatatggttcatcaaacttctaaaataccatat |
231 |
Q |
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| T |
10140165 |
agtgtcgagatcaaatacatttaacccttttaaccggcaggggaaaatatatttaacccttcaatataatatgtttcatcaaacttctaaaataccatat |
10140066 |
T |
|
| Q |
232 |
cattttttagggactaaagatataagatctttttcgatgtaaaaaatgtaagcttcgttagtagtattaatgaaactaacactattggccatca |
325 |
Q |
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| T |
10140065 |
cattttttagggactaacgatataagatctttttctatgtaaaaattttaagcctcgt------tattagtgaaactaaaactattggccatca |
10139978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 34845720 - 34845562
Alignment:
| Q |
176 |
aaatatatttaatccttcaatataatatggttcatcaaacttctaaaataccatatcattttttagggactaaagatataagatctttttcgatgtaaaa |
275 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34845720 |
aaatatatttaacccttcaatataatatggttcatcaaacttctaaaataccatatcattttttagggactaaagatataagatctttttcgatgtaaaa |
34845621 |
T |
|
| Q |
276 |
aatgtaagcttcgttagtagtattaatgaaactaacactattggccatcatgtacaatg |
334 |
Q |
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| T |
34845620 |
aatgtaagcttcgttagtagtattaatgaaactaaaactattggccatcatgtacaatg |
34845562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 34845852 - 34845699
Alignment:
| Q |
12 |
aaaggcggtaatagaatatgattacctaatcaacaattaatattagattgaatctcaaaaattaaggttaatagtcattcaaaacataaatcgatttatg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34845852 |
aaaggcggtaatagaatatgattacctaatcaacaattaatattagattgaatctcaaaaattaaggttaataatcattcaaaacataaatcgatttatg |
34845753 |
T |
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| Q |
112 |
aacattcataaatacataaaagtaccaagatcaaatacatttaaccctttaata |
165 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
34845752 |
aacattcataaatgcataaaagtaccaagatcaaatatatttaacccttcaata |
34845699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 30477762 - 30477692
Alignment:
| Q |
62 |
aatctcaaaaattaaggttaatagtcattcaaaacataaatcgatttatgaacattcataaatacataaaa |
132 |
Q |
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||||||||||| |||||||||||||||||||||| || ||||||| ||||| |||| |||| |||||||| |
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| T |
30477762 |
aatctcaaaaactaaggttaatagtcattcaaaatttagatcgattcatgaaaattcgtaaacacataaaa |
30477692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 9084478 - 9084389
Alignment:
| Q |
43 |
aacaattaatattagattgaatctcaaaaattaaggttaatagtcattcaaaacataaatcgatttatgaacattcataaatacataaaa |
132 |
Q |
| |
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||||| ||||||||| |||| |||||||| || ||||||||||||| || || | ||||||||||| |||||| ||| ||||||||| |
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| T |
9084478 |
aacaactaatattaggttgagtctcaaaagctagcgttaatagtcatttaagaccaagatcgatttatggacattcttaattacataaaa |
9084389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 28458835 - 28458899
Alignment:
| Q |
68 |
aaaaattaaggttaatagtcattcaaaacataaatcgatttatgaacattcataaatacataaaa |
132 |
Q |
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|||||||||| ||||||||||||||| || || || ||||||| ||||||| |||| || ||||| |
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| T |
28458835 |
aaaaattaagattaatagtcattcaagacctatattgatttatcaacattcgtaaacacgtaaaa |
28458899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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