View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_11 (Length: 429)

Name: NF10167_low_11
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_11
NF10167_low_11
[»] chr8 (4 HSPs)
chr8 (8-199)||(27816943-27817134)
chr8 (266-412)||(27816730-27816876)
chr8 (274-411)||(27814834-27814970)
chr8 (8-134)||(27815321-27815451)
[»] chr6 (2 HSPs)
chr6 (347-404)||(3634430-3634488)
chr6 (311-374)||(22259193-22259256)
[»] chr4 (1 HSPs)
chr4 (317-401)||(24476401-24476485)
[»] chr3 (1 HSPs)
chr3 (311-403)||(17132789-17132881)
[»] chr1 (1 HSPs)
chr1 (311-390)||(11821918-11821996)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 27817134 - 27816943
Alignment:
Q  8 gttattttttagaaaaagagttataaacataagctaattaacataagataatacacttcaattcattgtatctgagatgcacacataaatgaaaaataag 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27817134 gttattttttagaaaaatagttataaacataagctaattaacataagataatacacttcaattcattgtatctgagatgcacacataaatgaaaaataag 27817035  T
Q  108 aaaattatattatcaagcctttatatataaaacctaaaactactatatgaagacaaaaggttattcgatagaaattagtgaagtaatgcaag 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27817034 aaaattatagtatcaagcctttatatataaaacctaaaactactatatgaagacaaaaggttattcgatagaaattagtgaagtaatgcaag 27816943  T

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Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 266 - 412
Target Start/End: Complemental strand, 27816876 - 27816730
Alignment:
Q  266 gatggcttagcaaatctttacgtatattctgactattgtttatgtacgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttc 365  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27816876 gatggtttagcaaatctttacgtatattctgactattgtttctgtacgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttc 27816777  T
Q  366 ctatgaaaactattatataaacataagagaaaataactactcaaact 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27816776 ctatgaaaactattatataaacataagagaaaataactactcaaact 27816730  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 411
Target Start/End: Complemental strand, 27814970 - 27814834
Alignment:
Q  274 agcaaatctttacgtatattctgactattgtttatgtacgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttcctatg-aa 372  Q
    |||||||||| || || ||||||||||||||   ||  |||||||||||||| ||||||   ||| ||||| |||||| |||||||||||||||||| ||    
T  27814970 agcaaatcttaacatacattctgactattgtcactg--cgctggtactttgagtgtttggaatctgtaaatgagatttatgacccctttttcctatggaa 27814873  T
Q  373 aactattatataaacataagagaaaataactactcaaac 411  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  27814872 aactactatatatacataagagaaaataactactcaaac 27814834  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 27815451 - 27815321
Alignment:
Q  8 gttattttttagaaaaagagttataaacataagctaattaacata-----agataatacacttcaattcattgtatctgagatgcacacataaatgaaaa 102  Q
    ||||||||||||||||||||||||||||||||  |||||||||||     | || ||  ||  || ||||| |||| |||||||| ||||||||||||||    
T  27815451 gttattttttagaaaaagagttataaacataaaataattaacatatctctacattattaac-acacttcatagtatgtgagatgctcacataaatgaaaa 27815353  T
Q  103 ataagaaaattatattatcaagcctttatata 134  Q
    |||||  ||| ||| |||||||||| ||||||    
T  27815352 ataagctaatcatagtatcaagcctctatata 27815321  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 3634430 - 3634488
Alignment:
Q  347 gatttgtgacccctttttcctatg-aaaactattatataaacataagagaaaataacta 404  Q
    |||||||||||| ||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  3634430 gatttgtgacccgtttttcctatgaaaaactactatatatgcataagagaaaataacta 3634488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 22259256 - 22259193
Alignment:
Q  311 acgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttcctatgaaaa 374  Q
    ||||||||||||||| ||||||| |||| ||| | |||||||||| || |||||| ||||||||    
T  22259256 acgctggtactttgagtgtttgaattctgtaactgagatttgtgatccatttttcatatgaaaa 22259193  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 24476401 - 24476485
Alignment:
Q  317 gtactttgaatgtttgagttctataaataagatttgtgacccctttttcctatgaaa-actattatataaacataagagaaaataa 401  Q
    ||||||||| ||||||| |||| ||||| |||||||||| ||  ||||||||||||| |||| |||||| |||| |||||||||||    
T  24476401 gtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatatatacat-agagaaaataa 24476485  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 17132789 - 17132881
Alignment:
Q  311 acgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttcctatg-aaaactattatataaacataagagaaaataact 403  Q
    ||||||||||||| | || | || ||||||||  | ||||||||| || ||||||||||| ||||||| |||||| |||| |||||||||||||    
T  17132789 acgctggtactttcagtgctagaattctataataatgatttgtgaaccgtttttcctatgaaaaactactatatatacat-agagaaaataact 17132881  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 11821918 - 11821996
Alignment:
Q  311 acgctggtactttgaatgtttgagttctataaataagatttgtgacccctttttcctat-gaaaactattatataaacata 390  Q
    |||||||||||| ||||| | || |||||||||||  ||||||||||| ||||||||||  ||||||||||| || |||||    
T  11821918 acgctggtacttcgaatgctagaattctataaata--atttgtgacccgtttttcctataaaaaactattatttatacata 11821996  T

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