View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_12 (Length: 414)
Name: NF10167_low_12
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 8088502 - 8088106
Alignment:
| Q |
1 |
acaaaatcaatccatggaaaatctagtaaaaggcagccctagagaatccctataaaggtaggtggctacaaagggaggggggagatcccaccattgtgaa |
100 |
Q |
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| T |
8088502 |
acaaaattaatccatggaaaatctagtaaaaggcagccctagagaatccctataaaggtaggtggctacaaagggagggggt-gatcccaccattgtgaa |
8088404 |
T |
|
| Q |
101 |
gagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctctgagcgcatgagaaaaagagcaattgatctgcttgcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8088403 |
gagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgacttctttgagcgcatgagaaaaagagcaattgatctgcttgcagt |
8088304 |
T |
|
| Q |
201 |
aatgcatgcaattatgccatctagcctgcatcctccaagggacaccaacctatgtattgaaagctttgagcacactgagagagtcggtctcaacgcaaat |
300 |
Q |
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| T |
8088303 |
aatgcatacaattatgccatctagcctgcatcctccaaggcacaccaacctgtgtattgaaagctttgagcacactgagagagtcagtctcaacgtaaat |
8088204 |
T |
|
| Q |
301 |
atgttgaaggttcatgttggttgctttctccaaggcaaacaaacaggcactgaatttagcttctaggggagttgcgtgccaaatattttaagcaatat |
398 |
Q |
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| T |
8088203 |
atgttaaaggttcatgttggttgctttctccaaggcaaacaaacagacactaaatttagcttctgggggagttgcgtgccaaatattttgagcaatat |
8088106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 25061612 - 25061561
Alignment:
| Q |
86 |
tcccaccattgtgaagagtacaaagcaaggctttggccatttttggccaaag |
137 |
Q |
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| T |
25061612 |
tcccaccattgggaagagtacatagcaaggctttcgccattcttggccaaag |
25061561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 44652424 - 44652485
Alignment:
| Q |
101 |
gagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctct |
162 |
Q |
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| T |
44652424 |
gagtacaaagcaagaccttggccattcttagccaaggcatcagccaccaagttgccttctct |
44652485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 787073 - 786993
Alignment:
| Q |
85 |
atcccaccattgtgaagagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctctgag |
165 |
Q |
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|||||||||||| || ||| ||| ||||||||||||||||| ||||| || | ||| || || ||||| ||||||||||| |
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| T |
787073 |
atcccaccattgagaggagaacatggcaaggctttggccattcttggctaaggcatctgctaccaagttcccttctctgag |
786993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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