View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_13 (Length: 407)
Name: NF10167_low_13
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 69 - 407
Target Start/End: Complemental strand, 36733339 - 36733022
Alignment:
| Q |
69 |
tataaagattgtggcatgtaggaaaggaaatacaaatatgaaagaaggagagtgagagaagaggtagatattacgatgaaaaatcatgtagaaattccaa |
168 |
Q |
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| T |
36733339 |
tataaagattgtggcatgtaggaaaggaaatacaaatatgaaagaaggagagtgagagaagaggtagatattacgatgaaaaatcatgtagaaattccaa |
36733240 |
T |
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| Q |
169 |
gcaaaaagagtttatcttctttcatgttttaatcaggtttgcataattttatggattctttcgaggaattattgtttagtgaacataacccaaaaacttc |
268 |
Q |
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| T |
36733239 |
gcaaaaagagtttatcttctttcatgttttaatcaggtttacataattttatggattctttcgaggaattgttgtttagtgaacataac----------- |
36733151 |
T |
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| Q |
269 |
tttcaagcttccattggtcttgttccgagagattccttaaaatatttttgtaatcctataatgtttccaagatattcaataatttagatgttaaatctca |
368 |
Q |
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| T |
36733150 |
----------ccattggtcttgttccgagagattccttaaaatatttttgtaatcctataatgtttccaagatattcaataatttagatgttaaatctca |
36733061 |
T |
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| Q |
369 |
tagtaaggtttttcagaagagtaatgatacatagacacc |
407 |
Q |
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| T |
36733060 |
tagtaaggtttttcagaagagtaatgatacatagacacc |
36733022 |
T |
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