View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_15 (Length: 391)

Name: NF10167_low_15
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_15
NF10167_low_15
[»] chr6 (14 HSPs)
chr6 (1-56)||(17156228-17156284)
chr6 (1-55)||(24011936-24011991)
chr6 (1-55)||(13041759-13041819)
chr6 (1-55)||(34858133-34858188)
chr6 (1-55)||(8437636-8437696)
chr6 (1-42)||(1101206-1101248)
chr6 (1-42)||(3027348-3027390)
chr6 (1-42)||(3729116-3729158)
chr6 (1-42)||(4111448-4111490)
chr6 (1-42)||(4229895-4229937)
chr6 (1-42)||(13276578-13276620)
chr6 (1-42)||(28890972-28891014)
chr6 (1-55)||(1449907-1449957)
chr6 (1-29)||(24848920-24848948)
[»] chr3 (26 HSPs)
chr3 (1-56)||(24133760-24133816)
chr3 (1-56)||(41129787-41129843)
chr3 (1-55)||(42294114-42294169)
chr3 (1-51)||(46136428-46136479)
chr3 (1-55)||(52174871-52174926)
chr3 (1-55)||(33370415-33370470)
chr3 (1-49)||(2222148-2222197)
chr3 (1-55)||(41636283-41636343)
chr3 (1-56)||(18984261-18984317)
chr3 (1-56)||(31405984-31406040)
chr3 (1-56)||(34422732-34422788)
chr3 (1-55)||(54650446-54650501)
chr3 (1-55)||(4357088-4357148)
chr3 (1-42)||(1782750-1782792)
chr3 (1-42)||(13596179-13596221)
chr3 (1-42)||(19420980-19421022)
chr3 (1-42)||(20647861-20647903)
chr3 (1-42)||(28793666-28793708)
chr3 (1-42)||(29076882-29076924)
chr3 (1-42)||(39391068-39391110)
chr3 (1-42)||(40000845-40000887)
chr3 (1-55)||(25536846-25536896)
chr3 (1-55)||(47844505-47844555)
chr3 (1-55)||(51302361-51302421)
chr3 (1-40)||(24541042-24541082)
chr3 (1-29)||(26020420-26020448)
[»] chr5 (14 HSPs)
chr5 (1-55)||(17870105-17870160)
chr5 (1-56)||(42288566-42288622)
chr5 (1-55)||(32298676-32298731)
chr5 (1-56)||(27054561-27054612)
chr5 (1-55)||(10017763-10017823)
chr5 (1-49)||(32298782-32298831)
chr5 (1-42)||(9163446-9163488)
chr5 (1-42)||(11877480-11877522)
chr5 (1-42)||(12880477-12880519)
chr5 (1-42)||(18158396-18158438)
chr5 (1-42)||(40084001-40084043)
chr5 (1-42)||(42062370-42062412)
chr5 (1-55)||(34855325-34855375)
chr5 (1-29)||(10931650-10931678)
[»] chr4 (15 HSPs)
chr4 (1-55)||(41324477-41324532)
chr4 (1-54)||(49389438-49389492)
chr4 (1-56)||(41487453-41487509)
chr4 (1-55)||(45783932-45783987)
chr4 (1-55)||(34553973-34554028)
chr4 (1-55)||(47691583-47691638)
chr4 (1-55)||(48801301-48801356)
chr4 (1-56)||(3097928-3097989)
chr4 (1-42)||(12582117-12582159)
chr4 (1-55)||(29590535-29590595)
chr4 (1-42)||(11845419-11845461)
chr4 (1-42)||(38308137-38308179)
chr4 (1-42)||(40730502-40730544)
chr4 (1-42)||(48826018-48826060)
chr4 (1-55)||(20039719-20039769)
[»] chr1 (25 HSPs)
chr1 (1-55)||(5616499-5616554)
chr1 (1-56)||(31493506-31493562)
chr1 (1-55)||(27090885-27090940)
chr1 (10-55)||(18701094-18701140)
chr1 (1-55)||(12298134-12298194)
chr1 (1-54)||(15849814-15849873)
chr1 (1-56)||(42384204-42384260)
chr1 (1-60)||(47367561-47367621)
chr1 (1-55)||(44969032-44969087)
chr1 (1-56)||(5500024-5500085)
chr1 (1-56)||(39919603-39919664)
chr1 (1-56)||(29523131-29523187)
chr1 (1-43)||(6889573-6889616)
chr1 (1-43)||(6891419-6891462)
chr1 (1-42)||(8417245-8417287)
chr1 (1-42)||(18353106-18353148)
chr1 (1-42)||(19709037-19709079)
chr1 (1-42)||(33785212-33785254)
chr1 (1-42)||(52222743-52222785)
chr1 (1-55)||(13253254-13253304)
chr1 (1-55)||(15321962-15322022)
chr1 (6-55)||(5506939-5506984)
chr1 (312-364)||(42700708-42700760)
chr1 (1-56)||(46313629-46313685)
chr1 (1-54)||(46846769-46846818)
[»] chr2 (11 HSPs)
chr2 (1-56)||(7298830-7298886)
chr2 (1-56)||(5936835-5936891)
chr2 (1-56)||(29044104-29044165)
chr2 (1-59)||(21198200-21198264)
chr2 (1-56)||(7592607-7592663)
chr2 (1-42)||(13029170-13029212)
chr2 (1-42)||(29768308-29768350)
chr2 (1-42)||(34726389-34726431)
chr2 (1-42)||(38448096-38448138)
chr2 (1-42)||(40737818-40737860)
chr2 (1-55)||(32084178-32084238)
[»] chr8 (12 HSPs)
chr8 (1-55)||(8000021-8000076)
chr8 (1-55)||(16365045-16365105)
chr8 (1-55)||(12615125-12615180)
chr8 (1-56)||(14921365-14921426)
chr8 (1-58)||(31519141-31519199)
chr8 (1-56)||(32983265-32983326)
chr8 (1-56)||(38600891-38600952)
chr8 (1-55)||(7960624-7960684)
chr8 (1-55)||(41478739-41478789)
chr8 (1-55)||(44755544-44755604)
chr8 (1-42)||(26241285-26241327)
chr8 (1-41)||(33303845-33303886)
[»] chr7 (10 HSPs)
chr7 (1-55)||(18533428-18533483)
chr7 (1-55)||(21442027-21442082)
chr7 (1-55)||(41399775-41399834)
chr7 (1-42)||(2732308-2732350)
chr7 (1-42)||(3356978-3357020)
chr7 (1-42)||(11410539-11410581)
chr7 (1-42)||(12419217-12419259)
chr7 (1-42)||(14776247-14776289)
chr7 (1-42)||(15943183-15943225)
chr7 (5-56)||(32584827-32584874)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-42)||(40918-40960)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-38)||(14403-14441)
[»] scaffold0886 (1 HSPs)
scaffold0886 (1-55)||(1851-1901)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17156284 - 17156228
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  17156284 tttcgtaggccaggctcaggcctatcaaaacctggcctggcctattcccacccctac 17156228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24011991 - 24011936
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  24011991 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaacccta 24011936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13041759 - 13041819
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  13041759 tttcgtaggccagactcaggcctatcaaagcctagcctggcctggcctattcccaccccta 13041819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34858188 - 34858133
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||    
T  34858188 tttcgtaggccaggctcagacctatcaaagcctggcctggcctattcctaccccta 34858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8437636 - 8437696
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||| |||||    
T  8437636 tttcgtaggccagactcaggcctatcaaagtctggcctggcctggcctattcccaacccta 8437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1101248 - 1101206
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  1101248 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 1101206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3027348 - 3027390
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  3027348 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 3027390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3729116 - 3729158
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  3729116 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 3729158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4111448 - 4111490
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  4111448 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 4111490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4229895 - 4229937
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  4229895 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 4229937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13276620 - 13276578
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  13276620 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 13276578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28890972 - 28891014
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  28890972 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 28891014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1449907 - 1449957
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    |||||||| ||||||||||||||||||||    |||||||||||||||| |||||    
T  1449907 tttcgtagaccagactcaggcctatcaaa----gcctggcctattcccaacccta 1449957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24848948 - 24848920
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa 29  Q
    |||||||||||||||||||||||||||||    
T  24848948 tttcgtaggccagactcaggcctatcaaa 24848920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24133816 - 24133760
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  24133816 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccacccctac 24133760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41129787 - 41129843
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  41129787 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccacccctac 41129843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42294169 - 42294114
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  42294169 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaccccta 42294114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46136428 - 46136479
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacc 51  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46136428 tttcgtaggccagactcaggcctatcaaagcctggcctggcctattcccacc 46136479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52174871 - 52174926
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  52174871 tttcgtaggccagactcaggcctatcaaagcctggcctggcctattcccaacccta 52174926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33370470 - 33370415
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  33370470 tttcgtatgccagactcaggcctatcaaagcctggcctggcctattcccaacccta 33370415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2222148 - 2222197
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattccca 49  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  2222148 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattccca 2222197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41636343 - 41636283
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  41636343 tttcgtaggccagactcaggcctatcaaagcctggcctggcctggcctattcccaccccta 41636283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18984261 - 18984317
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||    
T  18984261 tttcgtaggccagactcaggcataccaaagcctggcctggcctattcccaaccctac 18984317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31405984 - 31406040
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacc-tggcctggcctattcccacccctac 56  Q
    ||||||||||||| || |||||||||||| | |||||||||||||||||||||||||    
T  31405984 tttcgtaggccaggcttaggcctatcaaagcatggcctggcctattcccacccctac 31406040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34422732 - 34422788
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||    
T  34422732 tttcgtaggccaggctcgggcctatcaaagcctggcctggcctattcccaaccctac 34422788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 54650501 - 54650446
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  54650501 tttcgtaggccaggctcagacctatcaaagcctggcctggcctattcccaacccta 54650446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4357088 - 4357148
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||    
T  4357088 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaccccta 4357148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1782750 - 1782792
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  1782750 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 1782792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13596221 - 13596179
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  13596221 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 13596179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19421022 - 19420980
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  19421022 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 19420980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20647861 - 20647903
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  20647861 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 20647903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28793708 - 28793666
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  28793708 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 28793666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29076924 - 29076882
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  29076924 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 29076882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39391110 - 39391068
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  39391110 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 39391068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40000845 - 40000887
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  40000845 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 40000887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25536896 - 25536846
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||    ||||| |||||||||| |||||    
T  25536896 tttcgtaggccagactcaggcctatcaaa----gcctgacctattcccaacccta 25536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47844555 - 47844505
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||    || ||||||||||||| |||||    
T  47844555 tttcgtaggccagactcaggcctatcaaa----gcttggcctattcccaacccta 47844505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51302421 - 51302361
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      ||| ||||||||||||||||||||||    
T  51302421 tttcgtaggccaggctcaggcctatcaaagcctggcctagcctggcctattcccaccccta 51302361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24541042 - 24541082
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggc 40  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  24541042 tttcgtaggccaggctcaggcctatcaaagcctggcctggc 24541082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26020420 - 26020448
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa 29  Q
    |||||||||||||||||||||||||||||    
T  26020420 tttcgtaggccagactcaggcctatcaaa 26020448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17870105 - 17870160
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  17870105 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaccccta 17870160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42288566 - 42288622
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  42288566 tttcgtaggccagactcaggcctatcaaagcctggcctggtctattcccaaccctac 42288622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32298676 - 32298731
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  32298676 tttcgtaggccaggctcagacctatcaaagcctggcctggcctattcccaacccta 32298731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27054561 - 27054612
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||    |||||||||||||||||||||||    
T  27054561 tttcgtaggccaggctcaggcctatcaaa----gcctggcctattcccacccctac 27054612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10017823 - 10017763
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||    
T  10017823 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaccccta 10017763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32298782 - 32298831
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattccca 49  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  32298782 tttcgtagaccagactcagacctatcaaagcctggcctggcctattccca 32298831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9163488 - 9163446
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  9163488 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 9163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11877522 - 11877480
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  11877522 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 11877480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12880519 - 12880477
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  12880519 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 12880477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18158438 - 18158396
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  18158438 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 18158396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40084043 - 40084001
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  40084043 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 40084001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42062370 - 42062412
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  42062370 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 42062412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34855375 - 34855325
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||| ||||||||||    ||||||||||||||||||||||    
T  34855375 tttcgtaggccaggctcaagcctatcaaa----gcctggcctattcccaccccta 34855325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10931678 - 10931650
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa 29  Q
    |||||||||||||||||||||||||||||    
T  10931678 tttcgtaggccagactcaggcctatcaaa 10931650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41324477 - 41324532
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  41324477 tttcgtaggccagactcaggcctatcaaagcctggcctggcctattcccaacccta 41324532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49389492 - 49389438
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccct 54  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  49389492 tttcgtaggccaggctcaggcctatcaaaacctggcctggcctattcccacccct 49389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41487509 - 41487453
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  41487509 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaaccctac 41487453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45783932 - 45783987
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  45783932 tttcataggccagactcaggcctatcaaagcctggtctggcctattcccaccccta 45783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34553973 - 34554028
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||    
T  34553973 tttcgtaggccaggctcaagcctatcaaagcctggcctggcctattccaaccccta 34554028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47691638 - 47691583
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||    
T  47691638 tttcgtaggccaggctcaggcctatcaaagtctggcctggcctattcccaacccta 47691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48801301 - 48801356
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  48801301 tttcgttggccaggctcaggcctatcaaagcctggcctggcctattcccaacccta 48801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3097928 - 3097989
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  3097928 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 3097989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12582159 - 12582117
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  12582159 tttcgtaggccagactcaggcctatcaaagcctggcctggcct 12582117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29590535 - 29590595
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||    
T  29590535 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaccccta 29590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11845419 - 11845461
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  11845419 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 11845461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38308137 - 38308179
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  38308137 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 38308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40730502 - 40730544
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  40730502 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 40730544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48826060 - 48826018
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  48826060 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 48826018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20039719 - 20039769
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||    |||||||||||||||| |||||    
T  20039719 tttcgtaggccaggctcaggcctatcaaa----gcctggcctattcccaacccta 20039769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5616554 - 5616499
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  5616554 tttcgtaggtcagactcaggcctatcaaagcctggcctggcctattcccaccccta 5616499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31493506 - 31493562
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  31493506 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaaccctac 31493562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27090885 - 27090940
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  27090885 tttcgtaggccaggctcaggcctatcaaagtctggcctggcctattcccaccccta 27090940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 18701094 - 18701140
Alignment:
Q  10 ccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  18701094 ccagactcaggcctatcaaagcctggcctggcctattcccaccccta 18701140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12298194 - 12298134
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  12298194 tttcgtaggccagactcaggcctatcaaaacctagcctggcctggcctattcccaccccta 12298134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15849873 - 15849814
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccct 54  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  15849873 tttcgtaggccagactcaggcctatcaaatcctggcctggcctggcctattcccacccct 15849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42384260 - 42384204
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaac-ctggcctggcctattcccacccctac 56  Q
    ||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||    
T  42384260 tttcgtaggtcaggctcaggcctatcaaagtctggcctggcctattcccacccctac 42384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47367561 - 47367621
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacct-ggcctggcctattcccacccctacgtaa 60  Q
    ||||||||||||| ||||| ||||||||| || |||||||||||||||||||||| |||||    
T  47367561 tttcgtaggccaggctcagacctatcaaagcttggcctggcctattcccacccctgcgtaa 47367621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44969087 - 44969032
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||| |||||    
T  44969087 tttcgtaggctaggctcaggcctatcaaagcctggcctggcctattcccaacccta 44969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5500024 - 5500085
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  5500024 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 5500085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39919664 - 39919603
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  39919664 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 39919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29523131 - 29523187
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||| || ||||||    
T  29523131 tttcgtaggccaggctcagacctatcaaagcctggcctggcctattctcatccctac 29523187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6889573 - 6889616
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggccta 43  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||    
T  6889573 tttcgtaggccaggctcaggcctatcaaagcctggcctggccta 6889616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6891419 - 6891462
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggccta 43  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||    
T  6891419 tttcgtaggccaggctcaggcctatcaaagcctggcctggccta 6891462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8417287 - 8417245
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  8417287 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 8417245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18353148 - 18353106
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  18353148 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 18353106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19709037 - 19709079
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  19709037 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 19709079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33785254 - 33785212
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  33785254 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 33785212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52222785 - 52222743
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  52222785 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 52222743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13253304 - 13253254
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||    |||||||||||||||| |||||    
T  13253304 tttcgtaggccaggctcaggcctatcaaa----gcctggcctattcccaacccta 13253254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15321962 - 15322022
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      |||| |||||||||||||||||||||    
T  15321962 tttcgtaggccaggctcaggcctatcaaagcctggcctgacctggcctattcccaccccta 15322022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 5506939 - 5506984
Alignment:
Q  6 taggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    |||||||| |||||||||||||||    ||||||||||||||||||||||    
T  5506939 taggccaggctcaggcctatcaaa----gcctggcctattcccaccccta 5506984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 42700760 - 42700708
Alignment:
Q  312 aggttcgaactcaaataaagatgttcagcctaataataactacattgttagtt 364  Q
    |||||||||||||| | ||||||||||| ||||||||||| | ||||| ||||    
T  42700760 aggttcgaactcaagtgaagatgttcagtctaataataacaatattgtcagtt 42700708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46313685 - 46313629
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||| | ||||| ||||||||| |||||||||| ||||||    
T  46313685 tttcgtaggccaggctcaggcatttcaaagcctggcctgacctattcccaaccctac 46313629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46846818 - 46846769
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccacccct 54  Q
    ||||||||||||| |||||||||||||||    |||||||||||||||| ||||    
T  46846818 tttcgtaggccaggctcaggcctatcaaa----gcctggcctattcccaaccct 46846769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7298886 - 7298830
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  7298886 tttcgtaggccagactcaggcctatcaaagcctgatctggcctattcccacccctac 7298830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5936835 - 5936891
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||    
T  5936835 tttcgtaggccaggctcgggcctatcaaagcctggcctggcctattcccaaccctac 5936891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29044165 - 29044104
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  29044165 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 29044104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21198200 - 21198264
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctacgta 59  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||| |||||||||    
T  21198200 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctacgta 21198264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7592607 - 7592663
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||    
T  7592607 tttcgtaggccaggctcaggcgtatcaaagcctgacctggcctattcccaaccctac 7592663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13029170 - 13029212
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  13029170 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 13029212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29768350 - 29768308
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  29768350 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 29768308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34726389 - 34726431
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  34726389 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 34726431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38448096 - 38448138
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  38448096 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 38448138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40737860 - 40737818
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  40737860 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 40737818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32084178 - 32084238
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||| || |||||    
T  32084178 tttcgtaggccagactcaggcctatcaaagtctgccctggcctggcctattctcaacccta 32084238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8000076 - 8000021
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  8000076 tttcgtaggccaggctcaggcctatcaaagcctagcctggcctattcccaccccta 8000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16365045 - 16365105
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  16365045 tttcgtaggccagactcaggcctatcaaagtctggcctggcctggcctattcccaccccta 16365105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12615180 - 12615125
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||    
T  12615180 tttcgtaggtcaggctcaggcctatcaaagcctggcctggcctattcccaacccta 12615125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14921426 - 14921365
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  14921426 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 14921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31519199 - 31519141
Alignment:
Q  1 tttcgtaggccagactcaggcctatca-aacctggcctggcctattcccacccctacgt 58  Q
    ||||||||||||| ||||||||||||| | |||| ||||||||||||||| ||||||||    
T  31519199 tttcgtaggccaggctcaggcctatcatagcctgacctggcctattcccaaccctacgt 31519141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32983265 - 32983326
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  32983265 tttcgtaggccaggctcaggcctatcaaagcctaacctggcctggcctattcccacccctac 32983326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38600891 - 38600952
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccacccctac 56  Q
    ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||    
T  38600891 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacccctac 38600952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7960624 - 7960684
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaa------acctggcctggcctattcccaccccta 55  Q
    ||||||||||||||||||||||||||||      |||||||||||| ||||||||||||||    
T  7960624 tttcgtaggccagactcaggcctatcaaagcctgacctggcctggcttattcccaccccta 7960684  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41478739 - 41478789
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    |||||||||||||||||||||||||||||    ||||| ||||||||||||||||    
T  41478739 tttcgtaggccagactcaggcctatcaaa----gcctgacctattcccaccccta 41478789  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44755604 - 44755544
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa------cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||    
T  44755604 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaccccta 44755544  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26241327 - 26241285
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  26241327 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 26241285  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33303845 - 33303886
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcc 41  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  33303845 tttcgtaggccaggctcaggcctatcaaagcctggcctggcc 33303886  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18533428 - 18533483
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  18533428 tttcgtaggccaggctcaggcctatcaaagcctggcctggcctattcccaacccta 18533483  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21442027 - 21442082
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| || || ||||||||| ||||||||||||||||||||||||||    
T  21442027 tttcgtaggccaggcttagacctatcaaagcctggcctggcctattcccaccccta 21442082  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41399775 - 41399834
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-----cctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||     |||||||||||||||||||| |||||    
T  41399775 tttcgtaggccaggctcaggcctatcaaagccggcctggcctggcctattcccaacccta 41399834  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2732350 - 2732308
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  2732350 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 2732308  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3357020 - 3356978
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  3357020 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 3356978  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11410581 - 11410539
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  11410581 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 11410539  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12419217 - 12419259
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  12419217 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 12419259  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14776247 - 14776289
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  14776247 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 14776289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15943183 - 15943225
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  15943183 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 15943225  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 32584874 - 32584827
Alignment:
Q  5 gtaggccagactcaggcctatcaaacctggcctggcctattcccacccctac 56  Q
    ||||||||| |||||||||||||||    |||||||||||||||||||||||    
T  32584874 gtaggccaggctcaggcctatcaaa----gcctggcctattcccacccctac 32584827  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40960 - 40918
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctggcct 42  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  40960 tttcgtaggccaggctcaggcctatcaaagcctggcctggcct 40918  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14403 - 14441
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaa-cctggcctg 38  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  14403 tttcgtaggccagactcaggcctatcaaagcctggcctg 14441  T

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Target: scaffold0886 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1851 - 1901
Alignment:
Q  1 tttcgtaggccagactcaggcctatcaaacctggcctggcctattcccaccccta 55  Q
    ||||||||||||| |||||||||||||||    ||||||||||||| ||||||||    
T  1851 tttcgtaggccaggctcaggcctatcaaa----gcctggcctattctcaccccta 1901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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