View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_16 (Length: 380)
Name: NF10167_low_16
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_16 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 1529 - 1882
Alignment:
| Q |
19 |
ttgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcaca |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
1529 |
ttgatagtgtatgtggtttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttggaataattatgtttt-cttttctttactatcaca |
1627 |
T |
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| Q |
119 |
attaaggataatgtatctttaattttggttttgcttactttctagtttagattaggtggcgtaaggcttttgtaatacttcgtgtctcgacaggttttta |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||| |
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| T |
1628 |
gttaaggataatgtatctttaattttggttttgattactttctagtttagattaggtggcgtaaggcctatgtaatacttggtgtcttgacaggttttta |
1727 |
T |
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| Q |
219 |
gtaggttgaatttggtgtaannnnnnnncctcatctagctctagtgcgtcattgagttcctcatctaactcttatggttccgttgcgattcttcatactt |
318 |
Q |
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| T |
1728 |
gtaggttgaatttggtgtaattttttttcctcatctagctctagtgcgtcattgagttcctcatctaactcttatggttccgttgcgattcttcatactt |
1827 |
T |
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| Q |
319 |
gtatattgataggatggatgacatatgtggcattcttcattctaagttcttctct |
373 |
Q |
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| T |
1828 |
gtatattgataggatggatgacatatgtggcattcatctttctaagttcttctct |
1882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 29945 - 30204
Alignment:
| Q |
18 |
attgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcac |
117 |
Q |
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| T |
29945 |
attgatagtgtatgtactttggtgttcatgattcttgctagtctaggagtaccatagcttagtattggagtaattatgtttt-cttttctttactatcat |
30043 |
T |
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| Q |
118 |
aattaaggataatgtatctttaattttggttttgcttactttctagtttagattaggtggcgtaaggcttttgtaatacttcgtgtctcgacaggttttt |
217 |
Q |
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| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| |
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| T |
30044 |
agttaaggataatgtccctttaattttggtttttcttactttctagtttagattaggtggcttaagggtttcataatacttggtgtctcgacaggttttt |
30143 |
T |
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| Q |
218 |
agtaggttgaatttggtgtaannnnnnnncctcatctagctctagtgcgtcattgagttcc |
278 |
Q |
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| T |
30144 |
agtaggttgaatttggtgtaattttttttcctcatctagctctagtgtctcattgagttcc |
30204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 118632 - 118515
Alignment:
| Q |
19 |
ttgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcaca |
118 |
Q |
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|||||||| || ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
118632 |
ttgatagtatacgtagtttggtgttcatgaatcttgctagtctaggagtaccattgcttagtgttagagtaattatgtttttcttttcgttactatcata |
118533 |
T |
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| Q |
119 |
attaaggataatgtatct |
136 |
Q |
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||||||||||||||||| |
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| T |
118532 |
gttaaggataatgtatct |
118515 |
T |
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