View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_17 (Length: 356)
Name: NF10167_low_17
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 8939184 - 8939448
Alignment:
| Q |
1 |
aacaatgtatgaattttgtttattatttacaggaatttatcaggagacatttggggtttatatagttgtttatagggcttttgttttatttaagaaca-- |
98 |
Q |
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| T |
8939184 |
aacaatgtatgaattttgtttattatttacaggaatttgtcaggagacatttggggtttatatagttgtttatagggcttttgttttatttaagaacact |
8939283 |
T |
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| Q |
99 |
gagttaggttcttttcttatgcttgttgaataaaatgttgagccaaatcttgttcatagaaaaccgtctttgtatagatcgagaaaatcatgtgttattc |
198 |
Q |
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| T |
8939284 |
gagttgggttcttttcttatgcgtattgaataaaacgttgagccaaatcttgttcatagaaaaccgtctttatatagat-gggaaaatcatgtgttattc |
8939382 |
T |
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| Q |
199 |
aaatcaatgctcaatcctattttcaataggagacgttgaaaattgaatccaaatcctatccattaa |
264 |
Q |
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| T |
8939383 |
aaatcaatgctcaatcctattttcgataggagacgttgaaaattgaatccaaatcctatccattaa |
8939448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 8939507 - 8939585
Alignment:
| Q |
262 |
taaactgcataaaagaactctcacataacttaagtcacgtttgttcagtatcatcaatgtgagttaagtcacatagaac |
340 |
Q |
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| T |
8939507 |
taaactgcataaaagaactctcacatgacttaagtcacgttcattcgatatcatcaatatgagttaagtcacattgaac |
8939585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 13225918 - 13225766
Alignment:
| Q |
105 |
ggttcttttcttatgcttgttgaataaaatgttgagccaaatcttgttcatagaaaaccgtctttgtatagatcgagaaaatcatgtg---ttattcaaa |
201 |
Q |
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| T |
13225918 |
ggttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaa |
13225819 |
T |
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| Q |
202 |
tcaatgctcaatcctattttcaataggagacgttgaaaattgaatccaaatcc |
254 |
Q |
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| T |
13225818 |
tccatagttaatcctatttcggataggagcagttgacaattgaatccaaatcc |
13225766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 18960034 - 18959877
Alignment:
| Q |
99 |
gagttaggttcttttcttatgcttgttgaataaaatgttgagccaaatcttgttcatagaaaaccgtctttgtatagatcgagaaaatcatgtgttatt- |
197 |
Q |
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| T |
18960034 |
gagttgggttcttttcttacgcgtattgtatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattg |
18959935 |
T |
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| Q |
198 |
--caaatcaatgctcaatcctattttcaataggagacgttgaaaattgaatccaaatcc |
254 |
Q |
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| T |
18959934 |
ttcaaatccatggt-aatcctatttcagatagaaggagttgacaattgaatccaaatcc |
18959877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 18991899 - 18991843
Alignment:
| Q |
141 |
ccaaatcttgttcatagaaaaccgtctttgtatagatcgagaaaatcatgtgttatt |
197 |
Q |
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| T |
18991899 |
ccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctatt |
18991843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 1540790 - 1540680
Alignment:
| Q |
147 |
cttgttcatagaaaaccgtctttgtatagatcgagaaaatcatgtgttatt---caaatcaatgctcaatcctattttcaataggagacgttgaaaattg |
243 |
Q |
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| T |
1540790 |
cttgttcatagaaaattgtctttagttagatcgggaaaatcatgtgctattgttcaaatccacagtcaatcctatttgggataggagcagttgacaattg |
1540691 |
T |
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| Q |
244 |
aatccaaatcc |
254 |
Q |
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| T |
1540690 |
aatccaaatcc |
1540680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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