View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_2 (Length: 629)

Name: NF10167_low_2
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_2
NF10167_low_2
[»] chr7 (11 HSPs)
chr7 (17-238)||(3705922-3706149)
chr7 (137-203)||(3693354-3693420)
chr7 (17-67)||(3700674-3700724)
chr7 (17-79)||(3702991-3703055)
chr7 (142-202)||(3685618-3685678)
chr7 (17-65)||(3693215-3693265)
chr7 (102-201)||(3701070-3701169)
chr7 (552-609)||(6344152-6344209)
chr7 (558-613)||(29937142-29937197)
chr7 (556-609)||(2317478-2317531)
chr7 (257-290)||(3700872-3700905)
[»] chr1 (6 HSPs)
chr1 (554-616)||(25388354-25388416)
chr1 (565-611)||(3873903-3873949)
chr1 (557-609)||(28381534-28381586)
chr1 (553-612)||(27800813-27800872)
chr1 (556-609)||(30713395-30713448)
chr1 (556-616)||(9990619-9990680)
[»] chr2 (5 HSPs)
chr2 (553-610)||(37532790-37532847)
chr2 (553-611)||(1467576-1467634)
chr2 (552-609)||(36930756-36930813)
chr2 (557-609)||(13415254-13415306)
chr2 (557-611)||(27951935-27951989)
[»] chr8 (3 HSPs)
chr8 (557-609)||(39297990-39298042)
chr8 (556-592)||(9445394-9445430)
chr8 (552-596)||(26259754-26259798)
[»] chr6 (4 HSPs)
chr6 (552-608)||(33821005-33821061)
chr6 (557-612)||(11970453-11970508)
chr6 (557-603)||(28633770-28633816)
chr6 (552-609)||(15601895-15601952)
[»] chr5 (4 HSPs)
chr5 (554-609)||(28449274-28449329)
chr5 (552-609)||(33018937-33018994)
chr5 (557-609)||(35836780-35836832)
chr5 (552-597)||(22100362-22100407)
[»] chr4 (3 HSPs)
chr4 (557-609)||(17874467-17874519)
chr4 (556-609)||(50016067-50016120)
chr4 (560-611)||(43128100-43128151)
[»] scaffold0024 (1 HSPs)
scaffold0024 (556-592)||(87717-87753)
[»] chr3 (4 HSPs)
chr3 (572-611)||(6985471-6985510)
chr3 (572-611)||(8129520-8129559)
chr3 (552-603)||(8440927-8440978)
chr3 (552-597)||(25783087-25783132)
[»] scaffold0036 (1 HSPs)
scaffold0036 (557-611)||(45325-45379)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3705922 - 3706149
Alignment:
Q  17 acagtttatgtaactttt--taatgtctcaaattatgtttattggaatatt--------tagcttattctattcttcatgcagac-aaaaagtttaaggt 105  Q
    ||||||||||||||||||  ||||||||||| || ||||||||||||| ||        ||| |||||||||| |||||| | || ||||||||||||||    
T  3705922 acagtttatgtaacttttaataatgtctcaacttctgtttattggaatgttatttagattagattattctatt-ttcatgtataccaaaaagtttaaggt 3706020  T
Q  106 cggaacattgaggtcatttttagaaatatgagtgtgaatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtatggaa 205  Q
    ||||||||| |||||||||| ||||| |||||| |||||||||||||||   ||||||||||||||||| |||    ||||||||||||||||  |||||    
T  3706021 cggaacattaaggtcattttcagaaacatgagtctgaatgtttataaactagtcttattctcaattagggtga-tttttctggtgtaattcgg--tggaa 3706117  T
Q  206 attcatgttatttcgagcaggagctgatgtaca 238  Q
    |  ||||||||||||||||| ||||| ||||||    
T  3706118 a-ccatgttatttcgagcagaagctgttgtaca 3706149  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 3693354 - 3693420
Alignment:
Q  137 gtgtgaatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtatgg 203  Q
    ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3693354 gtgtgaatgtttataaaccattcttattctcaattagggtgatcggttctggtgtaattcggtatgg 3693420  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 3700674 - 3700724
Alignment:
Q  17 acagtttatgtaactttttaatgtctcaaattatgtttattggaatattta 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3700674 acagtttatgtaactttttaatgtctcaaattatgtttattggaatattta 3700724  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 3702991 - 3703055
Alignment:
Q  17 acagtttatgtaactttt--taatgtctcaaattatgtttattggaatatttagcttattctatt 79  Q
    ||||||||||||||||||  |||||||||||||| |||||||||| |||||||| ||||||||||    
T  3702991 acagtttatgtaacttttaataatgtctcaaattctgtttattgggatatttagattattctatt 3703055  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 3685618 - 3685678
Alignment:
Q  142 aatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtatg 202  Q
    |||||||||||||  ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  3685618 aatgtttataaactgttcctattctcaattagggtgatcggttctggtgtaattcggtatg 3685678  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3693215 - 3693265
Alignment:
Q  17 acagtttatgtaactttt--taatgtctcaaattatgtttattggaatatt 65  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  3693215 acagtttatgtaacttttaataatgtcttaaattatgtttattggaatatt 3693265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 3701070 - 3701169
Alignment:
Q  102 aggtcggaacattgaggtcatttttagaaatatgagtgtgaatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtat 201  Q
    |||||| | |||||| || | ||||||||||||||||| |||||| | |||||  |||||||||||||||||| | | |||| ||||| |||| ||||||    
T  3701070 aggtcgaagcattgatgttacttttagaaatatgagtgagaatgtgtgtaaactattcttattctcaattagggtaatcggtactggtctaatccggtat 3701169  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 6344152 - 6344209
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  6344152 tcatttgtggtggtcgagccctatgtcgtgtttaggcattgggtaaccacttcttgta 6344209  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 613
Target Start/End: Original strand, 29937142 - 29937197
Alignment:
Q  558 gtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattct 613  Q
    |||||||||||||   |||| ||||||||| ||||||||| |||||||||||||||    
T  29937142 gtggtggtcgagtcatttgttgtgtttaggtattggctaatcacttgttgtattct 29937197  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 609
Target Start/End: Complemental strand, 2317531 - 2317478
Alignment:
Q  556 ttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||||||||||||   |||||||||||||||||||| || |||||| |||||    
T  2317531 ttgtggtggtcgagtctcttgtcgtgtttaggcattggttagccacttcttgta 2317478  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 3700872 - 3700905
Alignment:
Q  257 taatcactgagaaaaagaatcactcaacctatat 290  Q
    |||||||||||||||| |||||||||||||||||    
T  3700872 taatcactgagaaaaataatcactcaacctatat 3700905  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 616
Target Start/End: Complemental strand, 25388416 - 25388354
Alignment:
Q  554 atttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattctgtg 616  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||    
T  25388416 atttgtggtggtcgagtcctttgtcgtgtttagacattggctagccacttgttgtattctgtg 25388354  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 611
Target Start/End: Complemental strand, 3873949 - 3873903
Alignment:
Q  565 tcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  3873949 tcgagtccattgtcgtgtttaggcattgactaaccacttgttgtatt 3873903  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 28381586 - 28381534
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  28381586 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 28381534  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 612
Target Start/End: Complemental strand, 27800872 - 27800813
Alignment:
Q  553 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattc 612  Q
    |||||||||||||||||| | ||||| | ||||||||||| ||| |||||||||||||||    
T  27800872 catttgtggtggtcgagtcctttgtcctatttaggcattgactagccacttgttgtattc 27800813  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 609
Target Start/End: Original strand, 30713395 - 30713448
Alignment:
Q  556 ttgtggtggtcgagt-tcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||    
T  30713395 ttgtggtggtcgagtctcat-gtcgtgtttaggcattggataaccacttcttgta 30713448  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 616
Target Start/End: Complemental strand, 9990680 - 9990619
Alignment:
Q  556 ttgtggtggtcgagttcattgtcgtgtttaggcattggcta-accacttgttgtattctgtg 616  Q
    |||||||| |||||| |||||||||||||||||||||  || || | |||||||||||||||    
T  9990680 ttgtggtgatcgagtccattgtcgtgtttaggcattgtgtagactatttgttgtattctgtg 9990619  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 553 - 610
Target Start/End: Original strand, 37532790 - 37532847
Alignment:
Q  553 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtat 610  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||    
T  37532790 catttgtggtggtcgagttcattgtcgtgtctaggcattgactaaccacattttgtat 37532847  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 611
Target Start/End: Complemental strand, 1467634 - 1467576
Alignment:
Q  553 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||| |||||||||||    
T  1467634 catttgtggtggtcgagctctttgtcgtgtttatgcattggctgacctcttgttgtatt 1467576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 609
Target Start/End: Complemental strand, 36930813 - 36930756
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  36930813 tcatttgtggtggtcgagccctatgtcgtgtttaggcattggttaaccacttcttgta 36930756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 13415306 - 13415254
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||| ||||| | |||||||||||||||||||||| |||| ||||||||||    
T  13415306 tgtggttgtcgaatccattgtcgtgtttaggcattggttaacaacttgttgta 13415254  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 611
Target Start/End: Original strand, 27951935 - 27951989
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||| ||||| | |||||||||||||||||||||| | || ||||||||||||    
T  27951935 tgtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 27951989  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 557 - 609
Target Start/End: Original strand, 39297990 - 39298042
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  39297990 tgtggttgtcgaattcattgtcgtgtttaggcattggttaaccacttgttgta 39298042  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 9445394 - 9445430
Alignment:
Q  556 ttgtggtggtcgagttcattgtcgtgtttaggcattg 592  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9445394 ttgtggtggtcgagtccattgtcgtgtttaggcattg 9445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 26259798 - 26259754
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggcta 596  Q
    |||||||||||||  ||| || |||||||||||||||||||||||    
T  26259798 tcatttgtggtggatgagctctttgtcgtgtttaggcattggcta 26259754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 608
Target Start/End: Complemental strand, 33821061 - 33821005
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgt 608  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  33821061 tcatttgtggtggttgagttcattgtcgtgtttaggcattggttaactacttcttgt 33821005  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 557 - 612
Target Start/End: Original strand, 11970453 - 11970508
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattc 612  Q
    |||||||||||||| ||||||||| ||||| ||| ||||| |||||||||||||||    
T  11970453 tgtggtggtcgagtccattgtcgtatttagacataggctagccacttgttgtattc 11970508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 557 - 603
Target Start/End: Original strand, 28633770 - 28633816
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccactt 603  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||    
T  28633770 tgtggtggttgagtccattgtcgtgtttaggcattggttaaccactt 28633816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 609
Target Start/End: Complemental strand, 15601952 - 15601895
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  15601952 tcatttgtggtggtcgagccccatgtcgtgtttaggcattggttaaccacttcttgta 15601895  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 554 - 609
Target Start/End: Original strand, 28449274 - 28449329
Alignment:
Q  554 atttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||    
T  28449274 atttgtggtggtcgagcccattgtcgtgtttaggcattgactaaccactttttgta 28449329  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 33018937 - 33018994
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||||||||||||||| ||  ||||||||||||||||||| ||||||||| |||||    
T  33018937 tcatttgtggtggtcgagctccatgtcgtgtttaggcattggttaaccacttcttgta 33018994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 35836832 - 35836780
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||| ||||| | |||||||||| ||||||||||| |||||||||||||||    
T  35836832 tgtggttgtcgaatccattgtcgtgcttaggcattggttaaccacttgttgta 35836780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Original strand, 22100362 - 22100407
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaa 597  Q
    |||||||||||||  |||| | ||||||||||||||||||||||||    
T  22100362 tcatttgtggtggatgagtcctttgtcgtgtttaggcattggctaa 22100407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 17874519 - 17874467
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    |||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  17874519 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 17874467  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 556 - 609
Target Start/End: Original strand, 50016067 - 50016120
Alignment:
Q  556 ttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 609  Q
    ||||||||||||||| |  ||||||||||||||||||| ||||||||| |||||    
T  50016067 ttgtggtggtcgagtcccatgtcgtgtttaggcattggttaaccacttcttgta 50016120  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 611
Target Start/End: Original strand, 43128100 - 43128151
Alignment:
Q  560 ggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||||||||  |||||||| ||||||||||||||| |||||| |||||||    
T  43128100 ggtggtcgagtctattgtcgtatttaggcattggctagccacttattgtatt 43128151  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 87717 - 87753
Alignment:
Q  556 ttgtggtggtcgagttcattgtcgtgtttaggcattg 592  Q
    ||||||||||||||| |||||||||||||||||||||    
T  87717 ttgtggtggtcgagtccattgtcgtgtttaggcattg 87753  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 6985510 - 6985471
Alignment:
Q  572 cattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  6985510 cattgtcgtgtttaggcattggataacaacttgttgtatt 6985471  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 8129559 - 8129520
Alignment:
Q  572 cattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  8129559 cattgtcgtgtttaggcattggttaacaacttgttgtatt 8129520  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 8440927 - 8440978
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccactt 603  Q
    ||||||||||||||||||  |  ||||||||||||||||||| |||||||||    
T  8440927 tcatttgtggtggtcgagccctatgtcgtgtttaggcattggttaaccactt 8440978  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 25783132 - 25783087
Alignment:
Q  552 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaa 597  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||    
T  25783132 tcatttgtggtggacgagtccattgtcatgtttaggcattgtctaa 25783087  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 611
Target Start/End: Original strand, 45325 - 45379
Alignment:
Q  557 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 611  Q
    |||||| ||||| | |||||||||||||||||||||| | || ||||||||||||    
T  45325 tgtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 45379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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