View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10167_low_21 (Length: 340)
Name: NF10167_low_21
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 44730619 - 44730937
Alignment:
| Q |
14 |
acaaacaagatttgtggtatctcacaattagaaaagcaaacaaaagagcacagaagaacagtgaactataagatgtcctcttaatatttttcattgtatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730619 |
acaaacaagatttgtggtatctcacaattagaaaagcaaacaaaagagcacagaagaacagtgaactataagatgtcctcttaatatttttcattgtatt |
44730718 |
T |
|
| Q |
114 |
gataactgcacaagtataactgctagatgtatagaatatacacacaactagttgtagaaaccatgatgaatgtagcttataaatgcacaatcaatcacag |
213 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44730719 |
gataaatgcacaagtataactgctagatttatagaatatacacacaactagttgtagaaaccatgatgaatgtagcttataattgcacaatcaatcacag |
44730818 |
T |
|
| Q |
214 |
ttttgctcaaattacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730819 |
ttttgctcaaattacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagc |
44730918 |
T |
|
| Q |
314 |
ggcatccactcccctttgc |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44730919 |
ggcatccactcccctttgc |
44730937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 332
Target Start/End: Original strand, 16867096 - 16867324
Alignment:
| Q |
103 |
ttcattgtattgataactgcacaagtataactgctagatgtatagaatatacacacaactagttgtagaaaccatgatgaatgtagcttataaatgcaca |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||||||| | |||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16867096 |
ttcattgtattgataaatgcacaagtatatccagtagatgtatagaata-atacacaactggtcttagaaaccatgatgaatgtagctaataaatgcaca |
16867194 |
T |
|
| Q |
203 |
atcaatcacagttttgctcaaattacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacag |
302 |
Q |
| |
|
| | |||||| ||| | | ||||||||||||||| |||| |||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16867195 |
aaccatcacaatttagtttgaattacaaagtttagataacataagtattaattttgacatttaagcagtagggtatgatgcttgcattgcaatgccacaa |
16867294 |
T |
|
| Q |
303 |
agtccttcagcggcatccactcccctttgc |
332 |
Q |
| |
|
||||||||||| ||||| || || |||||| |
|
|
| T |
16867295 |
agtccttcagcagcatcaacacctctttgc |
16867324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 30882042 - 30881858
Alignment:
| Q |
155 |
acacaactagttgtagaaaccatgatgaatgtagcttata-------aatgcacaatcaatcacagttttgctcaaattacaaagtttaggtaacttaag |
247 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| || |||||||||||||||||||| || | |
|
|
| T |
30882042 |
acacaaatagtcatagaaaccatgatgaatgtagctaatagatgataaatgcacaatcaatcacagctttgatcgaattacaaagtttaggtaacatacg |
30881943 |
T |
|
| Q |
248 |
tattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactcccctttgc |
332 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| |||||||||||| |
|
|
| T |
30881942 |
cattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgc |
30881858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 30719394 - 30719501
Alignment:
| Q |
225 |
ttacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactc |
324 |
Q |
| |
|
||||| |||||||||||| || | |||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| |||| |
|
|
| T |
30719394 |
ttacatagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactc |
30719493 |
T |
|
| Q |
325 |
ccctttgc |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
30719494 |
ccctttgc |
30719501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 67 - 332
Target Start/End: Complemental strand, 8899742 - 8899473
Alignment:
| Q |
67 |
aagaacagtgaactataagatgtcctcttaatatttttcattgtattgataactgcacaagtataactgctagatgtatagaatatacacacaactagtt |
166 |
Q |
| |
|
||||| ||||||| |||||| | |||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8899742 |
aagaaaagtgaacagtaagatttactcttaatatctt-cattgtattgataaatgcacaagtataacatgtagatgtatagaatatacaca--actagtt |
8899646 |
T |
|
| Q |
167 |
gtagaaac-------catgatgaatgtagcttataaatgcacaatcaatcacagttttgctcaaattacaaagtttaggtaacttaagtattaagtttga |
259 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||||||||||| | | || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
8899645 |
gtagaaactagaaaccatgatgaatgtagctgataaatgcacaaacaatcacagtttaggttgaaatacaaagtttaggtaacataagtattaagtttgg |
8899546 |
T |
|
| Q |
260 |
gaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactcccctttgc |
332 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||| |
|
|
| T |
8899545 |
catttaagcagtagggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgc |
8899473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 31727702 - 31727631
Alignment:
| Q |
261 |
aattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactcccctttgc |
332 |
Q |
| |
|
||||| ||||| || ||||||| |||||||||||||||||| |||||||| | |||||||| ||||||||| |
|
|
| T |
31727702 |
aattatgcagttggataagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgc |
31727631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University