View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_22 (Length: 339)
Name: NF10167_low_22
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 30902386 - 30902536
Alignment:
| Q |
175 |
gaaaggttattttatttgatttggcatataaactaataatatatttattttcaaattattcggcaatctcacttatgacggaagatttttgaccaaaact |
274 |
Q |
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| T |
30902386 |
gaaaggttattttatttgatttggcatataaactaagaatatatttattttcaaattattcggcaatctcacttatgacggaagatttttgaccaaaact |
30902485 |
T |
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| Q |
275 |
tatgagttatgacgaaagttgaataattggtttgcagatatacattctgtg |
325 |
Q |
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| T |
30902486 |
tatgagttatgacgaaagttgaataattggtttgcagatatacattctgtg |
30902536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30902232 - 30902298
Alignment:
| Q |
21 |
tccatgcaagctggcattttaagtcaatgcttacgggctgaaattgtaatctttattcaaatgcaaa |
87 |
Q |
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| T |
30902232 |
tccatgcaagctggcattttaagtcaatgcttacgggccgaaattgtaatctttattcaaatgcaaa |
30902298 |
T |
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