View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_25 (Length: 311)
Name: NF10167_low_25
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 48894191 - 48893890
Alignment:
| Q |
1 |
aataacaatggtgctggtagtgctactgttgtaggtggaaattccaatggtttaggaggttttcctgcaggatccactgcatctattccaaatggtggta |
100 |
Q |
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| T |
48894191 |
aataacaatggtgctggtagtgctactgttgtaggtggaaattccaatggtttaggaggttttcctgcaggatccactgcatctattccaaatggtggtt |
48894092 |
T |
|
| Q |
101 |
ttgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcatgctatgca |
200 |
Q |
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| T |
48894091 |
ttgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcatgctatgca |
48893992 |
T |
|
| Q |
201 |
gcaacagcctcagatgatgtatcacaggtcaccttttgttcctcctaatactggctatcattacaattataataactacattcctgcaaattactcctat |
300 |
Q |
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| T |
48893991 |
gcaacagcctcagatgatgtatcacaggtcaccttttgttcctcctaatactggctatcattacaattataataactacattcctgcaaattactcctat |
48893892 |
T |
|
| Q |
301 |
gc |
302 |
Q |
| |
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|| |
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| T |
48893891 |
gc |
48893890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 66 - 298
Target Start/End: Complemental strand, 24743001 - 24742764
Alignment:
| Q |
66 |
tgcaggatccactgcatctattccaaatggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatct |
165 |
Q |
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| T |
24743001 |
tgcaggatcctttgcagctattccaaatggtggttttgttactggccaatatccatcatctatgctaatgaacatgaatggtttcaataaccatccattt |
24742902 |
T |
|
| Q |
166 |
tcattgatgaacatgcaggcaaggcatgctatgcagcaacagcctcagatgatgtatcacaggtcacc--ttttgttcctcctaatactggc---tatca |
260 |
Q |
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| T |
24742901 |
tcattgatgaacatgctggcaaggcatgctatgcagcaacagcctcagatgatgtattacacatcaccttttttgttcctcctaatactggctattatta |
24742802 |
T |
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| Q |
261 |
ttacaattataataactacattcctgcaaattactcct |
298 |
Q |
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| T |
24742801 |
ttacaattataataactacattcatgcaaattactcct |
24742764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 10654674 - 10654786
Alignment:
| Q |
93 |
tggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcat |
192 |
Q |
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||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10654674 |
tggtggttttgttactggccaatatccatcatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgctggcaaggcat |
10654773 |
T |
|
| Q |
193 |
gctatgcagcaac |
205 |
Q |
| |
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| T |
10654774 |
gctatgcagcaac |
10654786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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