View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_26 (Length: 307)
Name: NF10167_low_26
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_26 |
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| [»] chr8 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 77 - 307
Target Start/End: Complemental strand, 38300869 - 38300639
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300869 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
38300770 |
T |
|
| Q |
177 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || ||||||||||||||||||||| ||| |
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| T |
38300769 |
ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc |
38300670 |
T |
|
| Q |
277 |
caatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
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|||||| |||| ||| |||| |||||||||| |
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| T |
38300669 |
caatgttgaaagcttaatccttgggtcaaga |
38300639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 77 - 307
Target Start/End: Complemental strand, 38321614 - 38321384
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
176 |
Q |
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||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| | ||| |
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| T |
38321614 |
cttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatac |
38321515 |
T |
|
| Q |
177 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321514 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
38321415 |
T |
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| Q |
277 |
caatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
38321414 |
caatgtagaaaacttcatccgtgggtcaaga |
38321384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 77 - 307
Target Start/End: Complemental strand, 38309516 - 38309286
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
176 |
Q |
| |
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||||||||||||||||| | ||||||||| |||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||| ||||| ||||| |
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| T |
38309516 |
cttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtac |
38309417 |
T |
|
| Q |
177 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
276 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| ||| |
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| T |
38309416 |
ttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataagc |
38309317 |
T |
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| Q |
277 |
caatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
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|||||| |||| ||| |||| |||||||||| |
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| T |
38309316 |
caatgtggaaagctttatccttgggtcaaga |
38309286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 307
Target Start/End: Complemental strand, 38317519 - 38317289
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
176 |
Q |
| |
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||||||| |||||||||| ||||||||| ||||| |||| ||| ||||||||| |||||||||||||||| || |||||| | || ||||| ||| | |
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| T |
38317519 |
cttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgc |
38317420 |
T |
|
| Q |
177 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||| || |||||||||||||||||||| ||| |
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| T |
38317419 |
ttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaataagc |
38317320 |
T |
|
| Q |
277 |
caatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
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||| || |||||||||||||||||||||||| |
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| T |
38317319 |
caacgtcgaaaacttcatccgtgggtcaaga |
38317289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 307
Target Start/End: Complemental strand, 38326349 - 38326134
Alignment:
| Q |
92 |
ccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatact |
191 |
Q |
| |
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|||| ||||||||| || | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| ||||| || ||||||||||| |
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| T |
38326349 |
ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact |
38326250 |
T |
|
| Q |
192 |
tgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagccaatgtagaaaactt |
291 |
Q |
| |
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|| ||||||||||||||||||| || |||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||| || |
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| T |
38326249 |
tgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaataagccaatgttgaaaattt |
38326150 |
T |
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| Q |
292 |
catccgtgggtcaaga |
307 |
Q |
| |
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||||||||||||||| |
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| T |
38326149 |
aatccgtgggtcaaga |
38326134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 303
Target Start/End: Complemental strand, 38306766 - 38306540
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
176 |
Q |
| |
|
||||||||||||||||| | ||||||||| | | |||| ||| ||||||||| ||||||||||| |||| | | || |||||| | ||||| ||||| |
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|
| T |
38306766 |
cttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtac |
38306667 |
T |
|
| Q |
177 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | || ||| |||||||||||||||| ||| |
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|
| T |
38306666 |
ttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatcagc |
38306567 |
T |
|
| Q |
277 |
caatgtagaaaacttcatccgtgggtc |
303 |
Q |
| |
|
||| | || || |||||||||||||| |
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|
| T |
38306566 |
caaccttgagaatttcatccgtgggtc |
38306540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 38314072 - 38313878
Alignment:
| Q |
113 |
ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtacaact |
212 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||| ||| ||| || ||||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
38314072 |
ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtacaact |
38313973 |
T |
|
| Q |
213 |
tactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagccaatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
|
| ||||||||| ||||||||||| |||||| | || ||| ||||||||||||||| ||||||| | ||||| |||||||||||||||||| |
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| T |
38313972 |
ttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagccaatcttgaaaatttcatccgtgggtcaaga |
38313878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 77 - 307
Target Start/End: Original strand, 38849817 - 38850056
Alignment:
| Q |
77 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctgg---------ataattctttgcacgcaag |
167 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||| || | || |
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|
| T |
38849817 |
cttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttctttgaaccccag |
38849916 |
T |
|
| Q |
168 |
aaggagtacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagta |
267 |
Q |
| |
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|| ||| || |||| ||||| ||| |||||||||||| ||||||| |||||||||| || | |||||||||||||| || |||| |||||||| || |
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| T |
38849917 |
cagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttgaata |
38850016 |
T |
|
| Q |
268 |
acaatgagccaatgtagaaaacttcatccgtgggtcaaga |
307 |
Q |
| |
|
||||| |||||| || | |||||||||||||||||||||| |
|
|
| T |
38850017 |
acaataagccaaggttgtaaacttcatccgtgggtcaaga |
38850056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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