View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_27 (Length: 303)
Name: NF10167_low_27
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_27 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 16640 - 16928
Alignment:
| Q |
1 |
caatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtc |
100 |
Q |
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| T |
16640 |
caatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtc |
16739 |
T |
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| Q |
101 |
tcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctac---------attgataatatttggttaat |
191 |
Q |
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| T |
16740 |
tcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaat |
16839 |
T |
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| Q |
192 |
tttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
280 |
Q |
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| T |
16840 |
tttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1401718 - 1401430
Alignment:
| Q |
1 |
caatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401718 |
caatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagctaaagagggtc |
1401619 |
T |
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| Q |
101 |
tcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataa---------tatttggttaat |
191 |
Q |
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| T |
1401618 |
tcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaat |
1401519 |
T |
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| Q |
192 |
tttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
280 |
Q |
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| T |
1401518 |
tttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
1401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
177 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
264 |
Q |
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|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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