View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_3 (Length: 584)
Name: NF10167_low_3
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Complemental strand, 5835160 - 5834631
Alignment:
| Q |
13 |
aaggaccaagtatcatgctttcttgctatgagacggttctaagtttgtttttctccaatatacataagannnnnnnnnnnnnnnnctatttaattttcca |
112 |
Q |
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| T |
5835160 |
aaggaccaagtatcatgctttcttgctatgagacggttctaagtttgtttttctccaatatacataagattttttttcttttt--ctatttaattttcca |
5835063 |
T |
|
| Q |
113 |
agtatcaattttcaagaatattcctagaagccatttactagtacagaataacaagtacaagcagtgttgaaggctttccatttagaatctcgtatgtttg |
212 |
Q |
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| T |
5835062 |
agtatcaattttcaagaatattcctagaagccatttactagtacagaataacaagtacaagcagtgttgaaggctttccatttagaatctcgtatgtttg |
5834963 |
T |
|
| Q |
213 |
ctagctcaagtagtgaaaataattatctagtgaaaatatttatctgtaagggaaatattcttcaattttccacctccataatctaattccccccaaaatt |
312 |
Q |
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| T |
5834962 |
ctagctcaagtagtgaaaata-----------------tttatctgtaagggaaatattcttcaattttccacctccataatctaattccccccaaaatt |
5834880 |
T |
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| Q |
313 |
gacttataaagatgctagttctttgtcaagaaattccaatatttttgcagtcaatttcattagttgtggttttagttagaatttgcagtgcaaatataga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5834879 |
gacttataaagatgctagttctttgtcaagaaattccattatttgtgcagtcaatttcattagttgtggttttagttagaatttgcagtgcaaatataga |
5834780 |
T |
|
| Q |
413 |
aacaaaacctagaattaagggtatgactcagtttactgataagtggacaaatcactcgagcggggtgagttcatggnnnnnnnnnnnnnnnnnnagagtt |
512 |
Q |
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| T |
5834779 |
aacaaaacctagaattaagggtatgactcagtttactgataagtggacagatcactcgagc-gggtgagttcatgg------ttatttttttttagagtt |
5834687 |
T |
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| Q |
513 |
catggataatattgtaaattggaccgcaatatttaaacaaaggttacactctgaac |
568 |
Q |
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| T |
5834686 |
catggataatattgtaaattgaaccgcaatatttaaacaaaggttacactctgaac |
5834631 |
T |
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