View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_31 (Length: 284)

Name: NF10167_low_31
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_31
NF10167_low_31
[»] chr8 (1 HSPs)
chr8 (18-277)||(41480261-41480519)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 41480261 - 41480519
Alignment:
Q  18 attatgtatataaattctcttgcagcagcagcaacttctaatttaattcccagtcatcaacaccacaacaataaaaataacaattagagcgtaaagacga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41480261 attatgtatataaattctcttgcagcagcagcaacttctaatttaattcccagtcatcaacaccacaacaataaaaataacaattagagcgtaaagacga 41480360  T
Q  118 tatagtttgaaactcctcgttcaaatacataattggtcctctcaagttgattgtttgcaaataaaaaacataatgaactgttctgtcaagaaagttattg 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41480361 tatagtttgaaactcctcgttcaaatacataactggtcctctcaagttgattgtttgcaaataaaaaacataatgaactgttctgtcaagaaagttattg 41480460  T
Q  218 tttctttcatagacctttgttggatgattcatccattctacctccccctctttcttctca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41480461 tttctttcatagacctttgttggatgattcatccattctacct-cccctctttcttctca 41480519  T

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