View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_33 (Length: 259)
Name: NF10167_low_33
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38300487 - 38300247
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300487 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
38300388 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38300387 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgagttcact |
38300288 |
T |
|
| Q |
201 |
cttttaggcgtgtccagatgcaagcgaacggaacaatcaac |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300287 |
cttttaggcgtgtccagatgcaagcgaacggaacaatcaac |
38300247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 38321227 - 38320992
Alignment:
| Q |
6 |
gaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaag |
105 |
Q |
| |
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||||||||||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38321227 |
gaagtaggatgtgctgtgccattaatcatgttagcagtttcccttaaaggcaacaagaacacacaaatcttttcaactcttttccattcttctaccgaag |
38321128 |
T |
|
| Q |
106 |
gacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcactctttt |
205 |
Q |
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|
|||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||| | | |
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| T |
38321127 |
gacataactcataattatcatcatacaagtgaagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcat |
38321028 |
T |
|
| Q |
206 |
aggcgtgtccagatgcaagcgaacggaacaatcaac |
241 |
Q |
| |
|
|| | ||||||||||||||||||| |||| |||||| |
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| T |
38321027 |
agacatgtccagatgcaagcgaactgaactatcaac |
38320992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 38325980 - 38325749
Alignment:
| Q |
3 |
ttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccg |
102 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||||| |
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|
| T |
38325980 |
ttggaagtaggatgcgttgtgtcattaatcatgttagcagtttcacaaaaaggcaacaagaatgcacagatcttttctactcttttctactcttctaccg |
38325881 |
T |
|
| Q |
103 |
aaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcactct |
202 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |
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|
| T |
38325880 |
aaggacataactcataattatcctcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcatcaaataagttgagttcagact |
38325781 |
T |
|
| Q |
203 |
tttaggcgtgtccagatgcaagcgaacggaac |
234 |
Q |
| |
|
||| || |||| |||||||||||||||||| |
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|
| T |
38325780 |
catagacgagtcctgatgcaagcgaacggaac |
38325749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38313728 - 38313488
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||| |||||| | |
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|
| T |
38313728 |
agttggaagtaggatgtgttgcgccattaatcatgttggcagtttcacaaaaaggtaacaagaatgcacaaatcttttctactcttttccagtcttctgc |
38313629 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcact |
200 |
Q |
| |
|
|| ||||||| | ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
38313628 |
cgcaggacatgaatcataatcatcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcact |
38313529 |
T |
|
| Q |
201 |
cttttaggcgtgtccagatgcaagcgaacggaacaatcaac |
241 |
Q |
| |
|
|| ||| | | || |||||||||||||| |||| |||||| |
|
|
| T |
38313528 |
ctcatagacatatctagatgcaagcgaaccgaactatcaac |
38313488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38309134 - 38308894
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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|
| T |
38309134 |
agttggaagtacgatgtgttgcaccatttatcgtgttggcagtttcgctaaaaggcaacaagaatgcacaaatcttttctactcttttccactcttctgc |
38309035 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcact |
200 |
Q |
| |
|
|| ||||||| | |||||| ||| ||||||||||||||||||||||| || || |||||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
38309034 |
cgcaggacatgaatcataaccatcgtcatacaagtgaagactttcaaatgcaagctgatatttaagagcactttgaagcatcaaataagttgagttcact |
38308935 |
T |
|
| Q |
201 |
cttttaggcgtgtccagatgcaagcgaacggaacaatcaac |
241 |
Q |
| |
|
|| ||| | |||| |||||||| ||||| |||| |||||| |
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| T |
38308934 |
ctcatagacatgtctagatgcaaacgaacagaactatcaac |
38308894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38317137 - 38316897
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||| | | | |
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|
| T |
38317137 |
agtttgaagtaggatgcgttgtgtcattaatcatgttggcagtttcataaaaaggcagcaagaacgcacaaatcttttcaactcttttccactcatgtgc |
38317038 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcact |
200 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38317037 |
taaaggacataactggtaattatcatcatacaagtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcaga |
38316938 |
T |
|
| Q |
201 |
cttttaggcgtgtccagatgcaagcgaacggaacaatcaac |
241 |
Q |
| |
|
|| ||| | |||||||||||| || ||| |||| |||||| |
|
|
| T |
38316937 |
ctcatagacatgtccagatgcaggcaaacagaactatcaac |
38316897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 38306396 - 38306173
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||| || |
|
|
| T |
38306396 |
agttggaagtgggatgtgttgcaccattgatcatgttggcagtttcacgaaaaggcaacatgaatgcacaaatcttttccactcttttgca--------- |
38306306 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgtgttcact |
200 |
Q |
| |
|
|||||||| | |||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||| || ||||| ||||||||| |||||| |
|
|
| T |
38306305 |
-gaaggacacgagacataatcaccatcatacaagtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatcaaataagttgagttcaca |
38306207 |
T |
|
| Q |
201 |
cttttaggcgtgtccagatgcaagcgaacggaac |
234 |
Q |
| |
|
| ||| | |||||| |||||||||||| |||| |
|
|
| T |
38306206 |
gtcatagacatgtccatatgcaagcgaactgaac |
38306173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 38850208 - 38850387
Alignment:
| Q |
1 |
agttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| | |
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|
| T |
38850208 |
agttggaagtaggatgtgttgtgctattaatcatgttggcagtttcacaaaaaggcaacaggaatgcacaaatcttttctactcttttccactcttccgc |
38850307 |
T |
|
| Q |
101 |
cgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagca |
180 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| |||||||||| |
|
|
| T |
38850308 |
cgaaggacataaatcataactatcatcatacaagtgaaaactttcaaacgcacaccggtatttaagagctctttcaagca |
38850387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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