View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_37 (Length: 251)
Name: NF10167_low_37
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2326818 - 2327052
Alignment:
| Q |
1 |
gatatgggaaaatcaggaatcctaagccaacacttgaggataggattcatgacaaaaatttgttcataaatattgcagagcagcaatataccattacaag |
100 |
Q |
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| T |
2326818 |
gatatgggaaaatcaggaatcctaagccaacacttgaggataggattcatgacaaaaatttgttcataaatattgcagaacagcaatataccattacaag |
2326917 |
T |
|
| Q |
101 |
tatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtccgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326918 |
tatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggtcgttcacataatctttaaattccaagaaataagaattgtccgg |
2327017 |
T |
|
| Q |
201 |
ttccatgcaattttcaacataaagaccaagtttag |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2327018 |
ttccatgcaattttcaacataaagaccaagtttag |
2327052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 39571881 - 39571771
Alignment:
| Q |
82 |
agcaatataccattacaagtatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattcca |
181 |
Q |
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|||||||| |||| ||||||| ||||| ||| |||||| || |||| || | |||||| ||||||||||||| | |||| || |||||||| |||| |
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| T |
39571881 |
agcaatatgccatcacaagtactgattaaatcccccattgtttgaggtgtttccaaatcaatcctttcaaattgcctattcatatcatctttaatatcca |
39571782 |
T |
|
| Q |
182 |
agaaataagaa |
192 |
Q |
| |
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||||||||||| |
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| T |
39571781 |
agaaataagaa |
39571771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 7256436 - 7256221
Alignment:
| Q |
15 |
aggaatcctaagccaacacttgaggataggattcatgacaaaaatttgttca-taaatattgcag--agcagcaatataccattacaagtatcgattata |
111 |
Q |
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|||||| |||||||||||||||||||| || |||| |||| ||||||||| | ||| | | | | |||||||||||||||| ||||||| ||| || | |
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| T |
7256436 |
aggaattctaagccaacacttgaggatggggttcacgacataaatttgtttagtaattctcgaaattagcagcaatataccataacaagtaccgactaca |
7256337 |
T |
|
| Q |
112 |
tctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtccggttccatgcaat |
211 |
Q |
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| T |
7256336 |
tgtcccattttttgaggtgttcccaaatcagtcctttcaaagtggccattgacactatctttaaattccaagaaataagatttgtcttgtgccatgcaat |
7256237 |
T |
|
| Q |
212 |
tttcaacataaagacc |
227 |
Q |
| |
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||||||| |||||||| |
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| T |
7256236 |
tttcaacgtaaagacc |
7256221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 49388138 - 49388199
Alignment:
| Q |
131 |
ttcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa |
192 |
Q |
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|||| ||||||||| ||||||||||| |||| || |||||| |||||||||||||||||| |
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| T |
49388138 |
ttcccaaatcagtcttttcaaattggccattcaaatcatctttgaattccaagaaataagaa |
49388199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 9841519 - 9841406
Alignment:
| Q |
79 |
agcagcaatataccattacaagtatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaatt |
178 |
Q |
| |
|
||||||||||| |||| |||| || |||||| || ||| | | || |||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
9841519 |
agcagcaatatgccatcacaactaccgattacatatcctagtttttgaggtgttcctaaatcagtcctttcaaattggtcattcacatcatctttaaatt |
9841420 |
T |
|
| Q |
179 |
ccaagaaataagaa |
192 |
Q |
| |
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|||||||||||||| |
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| T |
9841419 |
ccaagaaataagaa |
9841406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 9846551 - 9846485
Alignment:
| Q |
126 |
aggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa |
192 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
9846551 |
aggtgttcccaaatcagtcctttcaaattggtcattcacatcatctttaaattccaagaaataagaa |
9846485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 9902445 - 9902359
Alignment:
| Q |
106 |
attatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa |
192 |
Q |
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||||||||||||||| | ||||||||| |||| |||||||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
9902445 |
attatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaa |
9902359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 46445476 - 46445410
Alignment:
| Q |
126 |
aggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa |
192 |
Q |
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||||||||| |||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
46445476 |
aggtattccaaaatcaaacctttcaaattggccgttcacatcatcattaaattccaagaaataagaa |
46445410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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