View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_38 (Length: 250)
Name: NF10167_low_38
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10342320 - 10342556
Alignment:
| Q |
1 |
aaaagcaaaggctgcattctgagactgggaaagtcaatgtagatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttac |
100 |
Q |
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| T |
10342320 |
aaaagcaaaggctgcattctgagattgggaa-gtcaatgtagatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttac |
10342418 |
T |
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| Q |
101 |
agaaagtttcaagaaagtagtatttgtacaaagaggtgtgtggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgtataaaataaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10342419 |
agaaagtttcaagaaattagtatttgtacaaagaggtgtgtggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgt-----ataaa |
10342513 |
T |
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| Q |
201 |
atatatattctcttaccaaatattaaggaaaaagtctatgctt |
243 |
Q |
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||||||||||||| |||||||||| ||||| |||||||||||| |
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| T |
10342514 |
atatatattctctaaccaaatattgaggaataagtctatgctt |
10342556 |
T |
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