View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_39 (Length: 250)

Name: NF10167_low_39
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_39
NF10167_low_39
[»] chr8 (1 HSPs)
chr8 (1-240)||(3101365-3101603)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3101603 - 3101365
Alignment:
Q  1 tccttaaaatatcaaatagaagatttattcactaagcttgtagtcctaattaatcactactattatctttgcatttgtttatatcaaaaaataataatct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3101603 tccttaaaatatcaaatagaa-atttattcactaagcttgtagtcctaattaatcactattattatctttgcatttgtttatatcaaaaaataataatct 3101505  T
Q  101 tttcaattcccttcctaattacaaaatgctaatagtcaaaagagaaacaaatgaaaataaaaaaccatagt--tgtactccatgtttcagtttgtttgat 198  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||  | |||||| ||||||| ||||||||||    
T  3101504 tttcaattcccttcctaattacaaaatgctaatagtcaatagagaaacaaatgaaagtaaagaaccatagttctatactccttgtttcattttgtttgat 3101405  T
Q  199 tgcttttcctacttgacttagtatgcgacccaacaacctttg 240  Q
    |||||||| ||||||| ||||  ||||||| |||||||||||    
T  3101404 tgcttttcgtacttgatttag--tgcgaccaaacaacctttg 3101365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University