View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_4 (Length: 572)
Name: NF10167_low_4
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 564
Target Start/End: Complemental strand, 43550530 - 43549981
Alignment:
| Q |
15 |
aataatgctggtgagagcattagcagctgcaacttgagaatcggggaaagcagaatccttaagaaccttcagtagaggcaaaacaccaccttcttccaca |
114 |
Q |
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| T |
43550530 |
aataatgctggtgagagcattagcagctgcaacttgagaatcagggaaagcagaatccttaagaaccttcagtagaggcaaaacaccaccttcttccaca |
43550431 |
T |
|
| Q |
115 |
atgatgaacttgttccgatcattatctttagcaagagaacccaattcattagcggcttcaacacgatccttagggttaccaagctgaagggtataaattg |
214 |
Q |
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| T |
43550430 |
atgatgaacttgttccgatcattatctttagcaagagaacccaattcattagcggcttcaacacgatccttagggttaccaagctgaagggtataaattg |
43550331 |
T |
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| Q |
215 |
aagtccacacccaagccaagattggatcattacttgcaattggagatatcgaaagattagtccctttagactcaaatatgctcaacaaccacatcatatc |
314 |
Q |
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| T |
43550330 |
aagtccacacccaagccaagattggatcattacttgcaattggagatatcgaaagattagtccctttagactcaaatatgctcaacaaccacatcatatc |
43550231 |
T |
|
| Q |
315 |
accgttagaagattctagaagattccaaacttttcgaaaatcaccagtactactcatggttaacacattcctcaggacattaacaccttgacttttgcac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43550230 |
accgttagaagattctagaagattccaaacttttcgaaaatcaccagtactactcatggttaacacattcctcaggacattgacaccttgacttttgcac |
43550131 |
T |
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| Q |
415 |
ctccgcataagtgcaagcgttttttctagattctttgataattctctcaccatgcgtcggattggtctatcgtttaacgattgatggctccctgtcacca |
514 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43550130 |
ctccgcacaagtgcaagcgttttttctagattctttgataattctctcaccatgcgtcggattggtctatcgtttaacgattgatggctccctgtcacca |
43550031 |
T |
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| Q |
515 |
ctcgcacaacacctcgaagatttttgcagagtatctccaccttctctgct |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43550030 |
ctcgcacaacacctcgaagatttttgcagagtatctccaccttctttgct |
43549981 |
T |
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