View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_42 (Length: 250)
Name: NF10167_low_42
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_42 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 15394326 - 15394090
Alignment:
| Q |
14 |
agaaaacttctgaaacaaatcaaaataacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaatt |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15394326 |
agaaaacttctgaaacaaatcaaattaacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaaagttgcaaatt |
15394227 |
T |
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| Q |
114 |
gcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15394226 |
gcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcaaat |
15394127 |
T |
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| Q |
214 |
ttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15394126 |
ttctgttgcaaatcccacatactacctttgttatcat |
15394090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 15385892 - 15385655
Alignment:
| Q |
14 |
agaaaacttctgaaacaaatcaaaataacatagatcgaaaaa-ttacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
15385892 |
agaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattacttaaaatcacttaacagacatgtcgtagacatcaaaatttcaaagttgcaaat |
15385793 |
T |
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| Q |
113 |
tgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaa |
212 |
Q |
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| T |
15385792 |
tgcagtttcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttctgagccttcctgcttctgcatccattggctggtcaag |
15385693 |
T |
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| Q |
213 |
tttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15385692 |
tttctgttccaaatcccacatactgcctttgttatcat |
15385655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 38669678 - 38669778
Alignment:
| Q |
149 |
atcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttgttatc |
248 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||| | ||||| | ||||||||||||||||||||||||||| |
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| T |
38669678 |
atcatactttttctctgtacatattcctgagtcttcctgcctcttcctccataggctggtcaagcttctgatccaaatcccacatactacctttgttatc |
38669777 |
T |
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| Q |
249 |
a |
249 |
Q |
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| T |
38669778 |
a |
38669778 |
T |
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