View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_47 (Length: 247)

Name: NF10167_low_47
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_47
NF10167_low_47
[»] chr5 (2 HSPs)
chr5 (56-247)||(10521363-10521554)
chr5 (170-247)||(35854604-35854681)
[»] chr4 (6 HSPs)
chr4 (174-247)||(54304286-54304359)
chr4 (141-247)||(55705943-55706049)
chr4 (170-247)||(45876742-45876819)
chr4 (170-247)||(47293518-47293595)
chr4 (176-243)||(45858817-45858884)
chr4 (176-247)||(56208543-56208614)
[»] chr8 (2 HSPs)
chr8 (145-247)||(7972057-7972159)
chr8 (147-245)||(7961689-7961787)
[»] chr2 (1 HSPs)
chr2 (176-247)||(24357517-24357588)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 10521554 - 10521363
Alignment:
Q  56 gtcctccagtagtttattaagtgattggtgatcttcaacaaaagcatagccaatacctcttgaaagcatgagtagagtaggaccggatcatgagagctcc 155  Q
    |||||| ||||||| ||||||| || || ||||  |||| |  ||||| ||||| || ||| |||| ||| |||||| ||||||||||| |||||||||     
T  10521554 gtcctctagtagttgattaagtaatcggggatcaccaacgagtgcataaccaatgccccttaaaagtatgcgtagagaaggaccggatcttgagagctcg 10521455  T
Q  156 acaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    |||| |  ||| | | |||||||||||||||||||||| |||||||| |||||||| ||||  |||||||||||||||||||||||||||||    
T  10521454 acaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaacc 10521363  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 35854681 - 35854604
Alignment:
Q  170 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaacc 35854604  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 54304359 - 54304286
Alignment:
Q  174 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaacc 54304286  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 55706049 - 55705943
Alignment:
Q  141 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa 240  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa 55705950  T
Q  241 ccaaacc 247  Q
    |||||||    
T  55705949 ccaaacc 55705943  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 45876742 - 45876819
Alignment:
Q  170 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaacc 45876819  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 47293595 - 47293518
Alignment:
Q  170 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  |||||||||||||||||||||||    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaacc 47293518  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 45858817 - 45858884
Alignment:
Q  176 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaacca 243  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| ||||||||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaacca 45858884  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 56208543 - 56208614
Alignment:
Q  176 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaacc 56208614  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 7972057 - 7972159
Alignment:
Q  145 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 244  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  245 acc 247  Q
    |||    
T  7972157 acc 7972159  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 7961689 - 7961787
Alignment:
Q  147 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaa 245  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| ||||||    
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaa 7961787  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 24357588 - 24357517
Alignment:
Q  176 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 247  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaacc 24357517  T

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