View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_51 (Length: 242)

Name: NF10167_low_51
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_51
NF10167_low_51
[»] chr1 (4 HSPs)
chr1 (23-153)||(25672711-25672841)
chr1 (23-153)||(25677558-25677688)
chr1 (185-241)||(25672873-25672929)
chr1 (185-241)||(25677720-25677776)
[»] chr2 (12 HSPs)
chr2 (23-153)||(43009680-43009810)
chr2 (23-153)||(43011977-43012107)
chr2 (23-153)||(43014274-43014404)
chr2 (23-153)||(25199894-25200026)
chr2 (53-153)||(25204818-25204920)
chr2 (89-153)||(35073813-35073877)
chr2 (185-241)||(25200057-25200113)
chr2 (185-241)||(43009592-43009648)
chr2 (185-230)||(43011900-43011945)
chr2 (185-230)||(43014197-43014242)
chr2 (185-241)||(35073726-35073782)
chr2 (185-229)||(25204951-25204995)
[»] chr8 (2 HSPs)
chr8 (23-153)||(15092015-15092146)
chr8 (185-240)||(15092177-15092232)
[»] chr3 (3 HSPs)
chr3 (23-149)||(43678127-43678247)
chr3 (185-241)||(43678047-43678103)
chr3 (23-62)||(43679400-43679439)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 25672711 - 25672841
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25672711 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 25672810  T
Q  123 taactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||||||    
T  25672811 taactatttgaaattcaaactaacacactaa 25672841  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 25677558 - 25677688
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677558 agataacttcttctggccaagtaacttcctaataacttcccacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 25677657  T
Q  123 taactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||||||    
T  25677658 taactatttgaaattcaaactaacacactaa 25677688  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 25672873 - 25672929
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25672873 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 25672929  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 25677720 - 25677776
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677720 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 25677776  T

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Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 43009810 - 43009680
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43009810 agataacttcttctggccaagtaacttcctaataacttcccacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 43009711  T
Q  123 taactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||||||    
T  43009710 taactatttgaaattcaaactaacacactaa 43009680  T

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Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 43012107 - 43011977
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43012107 agataacttcttctggtcaagtaacttcctaataacttcccacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 43012008  T
Q  123 taactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||||||    
T  43012007 taactatttgaaattcaaactaacacactaa 43011977  T

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Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 43014404 - 43014274
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43014404 agataacttcttctggtcaagtaacttcctaataacttcccacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 43014305  T
Q  123 taactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||||||    
T  43014304 taactatttgaaattcaaactaacacactaa 43014274  T

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Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 25199894 - 25200026
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataa-aaataaaataacaaacagcaa-cttaaatacaatccacaaccacacccaata 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||  ||||||||||||||  |||||    
T  25199894 agataacttcttctagccaagtaacttcctaataacttccaacataagaaataaaacaacaaacatcaaacttaaatttaatccacaaccacaggcaata 25199993  T
Q  121 actaactatttgaaattcaaactaacacactaa 153  Q
    |||||||||||||||||||||||||||| ||||    
T  25199994 actaactatttgaaattcaaactaacacgctaa 25200026  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 25204818 - 25204920
Alignment:
Q  53 aataacttccaacataa-aaataaaataacaaacagcaa-cttaaatacaatccacaaccacacccaataactaactatttgaaattcaaactaacacac 150  Q
    ||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  25204818 aataacttccaacataagaaataaaacaacaaacaacaaacttaaatacaatccacaaccacatccaataactaactatttgaaatttaaactaacacac 25204917  T
Q  151 taa 153  Q
    |||    
T  25204918 taa 25204920  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 35073877 - 35073813
Alignment:
Q  89 aacttaaatacaatccacaaccacacccaataactaactatttgaaattcaaactaacacactaa 153  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35073877 aacttaaatataatccacaaccacacccaataactaactatttgaaattcaaactaacacactaa 35073813  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 25200057 - 25200113
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  25200057 gtttctcctttgataaaccctccaaatgacgggtttaccattctctttattctgtgc 25200113  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 43009648 - 43009592
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  43009648 gtttctcctttgataaaccctccaaatgacggatttacctttctctttagtctgtgc 43009592  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 43011945 - 43011900
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctct 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43011945 gtttctcctttgataaaccctccaaatgacgggtttacccttctct 43011900  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 43014242 - 43014197
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctct 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43014242 gtttctcctttgataaaccctccaaatgacgggtttacccttctct 43014197  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 35073782 - 35073726
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    ||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  35073782 gtttctcttttgataaaccctccaaatgatgagtttactcttctctttagtctgtgc 35073726  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 25204951 - 25204995
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctc 229  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  25204951 gtttcttctttgataaaccctccaaatgacgggtttacgcttctc 25204995  T

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Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 15092015 - 15092146
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaa-cttaaatacaatccacaaccacacccaataa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  15092015 agataacttcttctggccaagtaacttcctaataacttccaacctaaaaataaaacaacaaacagcaaacttaaatacaatccacaaccacacccaataa 15092114  T
Q  122 ctaactatttgaaattcaaactaacacactaa 153  Q
    ||||||||||||||||||||||||||||||||    
T  15092115 ctaactatttgaaattcaaactaacacactaa 15092146  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 15092177 - 15092232
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092177 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtg 15092232  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 43678247 - 43678127
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttccaacataaaaataaaataacaaacagcaacttaaatacaatccacaaccacacccaataac 122  Q
    ||||| || |||||| |||||||||||||| ||||||| |||||||||||||||| |||||||      |||||||||||||||||||||||| ||||||    
T  43678247 agatagctccttctgaccaagtaacttcctgataactttcaacataaaaataaaacaacaaac------ttaaatacaatccacaaccacacctaataac 43678154  T
Q  123 taactatttgaaattcaaactaacaca 149  Q
    |||||||||||||||||||||||||||    
T  43678153 taactatttgaaattcaaactaacaca 43678127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 43678103 - 43678047
Alignment:
Q  185 gtttctcctttgataaaccctccaaatgacgggtttacccttctctttagtctgtgc 241  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  43678103 gtttctcctttgataaactctccaaatgacaggtttacctttctctttagtctgtgc 43678047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 43679439 - 43679400
Alignment:
Q  23 agataacttcttctggccaagtaacttcctaataacttcc 62  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43679439 agataacttcttctggccaagtaacttcttaataacttcc 43679400  T

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