View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_53 (Length: 240)
Name: NF10167_low_53
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_53 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25329 - 25107
Alignment:
| Q |
1 |
cagagatttacaacttgttaccaggcttggagactatggagagaagataaattgcaagatttaatggacccaactctaagtgatacttacaacgttaacc |
100 |
Q |
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| T |
25329 |
cagagatttacaacttgttaccaggcttggagactatggagagaagataaattgcaagatttaatggacccaactctaagtgatacttacaacgttaacc |
25230 |
T |
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| Q |
101 |
aattcattaggtgttcacaaattggactcttatgcgtacaagacgaaccagatgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatgaaac |
200 |
Q |
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| T |
25229 |
aatttattaggtgttcacaaattggactcttatgcgtacaagacgaaccagatgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatgaaac |
25130 |
T |
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| Q |
201 |
tacaaccctcttaacacctaaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
25129 |
tacaaccctcttaacacctaaac |
25107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 21917486 - 21917261
Alignment:
| Q |
2 |
agagatttacaacttgttaccaggcttggagactatggagagaagataaattgcaagatttaatggacccaactctaagtgatacttacaacgttaacca |
101 |
Q |
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| T |
21917486 |
agagatttacatcttattaccaggcttggagactatggagagaggataaactgctagatttaatggacccgtctctatgtgatacttacaacgccaacca |
21917387 |
T |
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| Q |
102 |
att----cattaggtgttcacaaattggactcttatgcgtacaagacgaaccagatgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatga |
197 |
Q |
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| T |
21917386 |
atttatatattaggtgttcccaaattggactcttatgcgtacaggatgaaccggatgatcgtccacacatgtcaaatgtggtgaccatgctagagagtga |
21917287 |
T |
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| Q |
198 |
aactacaaccctcttaacacctaaac |
223 |
Q |
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| T |
21917286 |
aactacaaccctcataacccctaaac |
21917261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 37713395 - 37713267
Alignment:
| Q |
23 |
aggcttggagactatggagagaagataaattgcaagatttaatggacccaactctaagtgatacttacaacgttaaccaattcattaggtgttcacaaat |
122 |
Q |
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| T |
37713395 |
aggcatggagattatggacagagaataagttgctggatttaatggactcagctcttagtgaaacttgcaatgagaatgaatttgttaagtgcgcacaaat |
37713296 |
T |
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| Q |
123 |
tggactcttatgcgtacaagacgaaccag |
151 |
Q |
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| T |
37713295 |
tggactcttatgcgtacaagatgaaccag |
37713267 |
T |
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