View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_6 (Length: 541)
Name: NF10167_low_6
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Complemental strand, 4409376 - 4408849
Alignment:
| Q |
14 |
gagcagagaggaggttgagtaaagaagtgaaatccaaatcatcagagtaatccaaggaacgaaaaatatcaagagacgctttcgccacatattgcaagtt |
113 |
Q |
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| T |
4409376 |
gagcagtgaggaggttgagtaaagaagtgaaatccaaatcatcagagtaatccaaggaacgaaaaatatcaagagacgctttcgccacatattgcaagtt |
4409277 |
T |
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| Q |
114 |
gccaacatcattcaatgtggttttggtgctattaatatagtaaaaaacaagctcgtttaacatgaaggaagccacaccgtcgtcaatgtcaacgataatt |
213 |
Q |
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| T |
4409276 |
gccaacatcattcaatgtggttttggtgctattaatatagtaaaaaacaagctcgtttaacatgaaggaagccacaccgtcgtcaatgtcaacgataatt |
4409177 |
T |
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| Q |
214 |
ttcaatgtcttcaatgtaggtggcaagcaaattttgtcgtagtccttaacccaaaagtgattctccaaagtttctaggatagggcagccagagaggagga |
313 |
Q |
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| T |
4409176 |
ttcaatgtcttcaatgtaggtggcaagcaaattttgtcatagtccttaacccaaaagtgattctccagagtttctaggatagggcagccagagagaagga |
4409077 |
T |
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| Q |
314 |
catttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaataaatgtccttacaccattgcaagtcaaaatatattgc |
413 |
Q |
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| T |
4409076 |
catttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaataaatgtccttacaccattgcaagtcaaaatatattgc |
4408977 |
T |
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| Q |
414 |
accaacaagactgagctacatgtcaattgttattatgttatcatcgcgaaacattagaggaagtgtgccaatatactctagaacataggaaacctaaata |
513 |
Q |
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| T |
4408976 |
accaacaagactgagctacatgtcaattgttattatgttatcatcgtgaaacattagaggaagtgtgccaatatactctacaacataggaaacccaaata |
4408877 |
T |
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| Q |
514 |
tgtactacatctacaagtttgatatcct |
541 |
Q |
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| T |
4408876 |
tgtactacatctacaagtttgatatcct |
4408849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 23664761 - 23664935
Alignment:
| Q |
279 |
caaagtttctaggatagggcagccagagaggaggacatttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaataa |
378 |
Q |
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||||||||||| ||||||| ||||||| |||||| |||| |||||| ||| ||| |||||| || | ||| | || |||||||||||| |||||| | |
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| T |
23664761 |
caaagtttctaagatagggaagccagacaggagggcattcatggaacgcacgtccacataaccgatatcgagatgcagcttctttagtgacggtaaacga |
23664860 |
T |
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| Q |
379 |
atgtccttacaccattgcaagtcaaaatatattgcaccaacaagactgagctacatgtcaattgttattatgtta |
453 |
Q |
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| T |
23664861 |
atccccttagcacgtttcaagtcaaagtatactgctccgtccagactgaactacatgttaattcttattatgtta |
23664935 |
T |
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