View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_64 (Length: 219)

Name: NF10167_low_64
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_64
NF10167_low_64
[»] chr7 (1 HSPs)
chr7 (1-219)||(32562745-32562963)
[»] chr2 (4 HSPs)
chr2 (1-91)||(29966609-29966699)
chr2 (12-96)||(18114603-18114686)
chr2 (8-91)||(16195410-16195493)
chr2 (8-69)||(30462607-30462667)
[»] chr4 (4 HSPs)
chr4 (1-76)||(16404484-16404559)
chr4 (44-91)||(17743480-17743527)
chr4 (8-98)||(20748140-20748230)
chr4 (2-98)||(17651384-17651480)
[»] chr1 (1 HSPs)
chr1 (47-90)||(40817403-40817446)
[»] chr8 (3 HSPs)
chr8 (34-98)||(35104208-35104272)
chr8 (8-91)||(10516928-10517010)
chr8 (1-98)||(20706627-20706723)
[»] chr6 (1 HSPs)
chr6 (1-84)||(14760801-14760884)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32562745 - 32562963
Alignment:
Q  1 ttcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggactcttt 100  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  32562745 ttcaacgacattatccatttgaagcaaagttttcaaatctgaatcaaaacttctcaagaaagaatttgatgagttatcaatcttcaaacaaggactcttt 32562844  T
Q  101 tgtatggtcttcatatttttgaataaaaaatttcaagaatgattaagtcctttttatttactcaaatctttaggccttttaaattgttaggacttaacta 200  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562845 tgtgtggtcttcatatttttgaataaaaaatttcaaaaatgattaagtcctttttatttactcaaatctttaggccttttaaattgttaggacttaacta 32562944  T
Q  201 atttcatattaagacttaa 219  Q
    |||||||||||||||||||    
T  32562945 atttcatattaagacttaa 32562963  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29966609 - 29966699
Alignment:
Q  1 ttcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaa 91  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |  || ||||||||||| | ||| |||||||||    
T  29966609 ttcaacgacattatccaattgaagcaaagttttcaaatatgaatcaaagcttctcaaaggtgattttgatgagttggaaatattcaaacaa 29966699  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 18114686 - 18114603
Alignment:
Q  12 tatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggact 96  Q
    |||||||| || |||||||||||||||| || ||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||    
T  18114686 tatccattagaggcaaagttttcaaatacga-tcaaagcttctcaaggacgaatttgatgcgttggcaatcttcaaacaatgact 18114603  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 16195410 - 16195493
Alignment:
Q  8 acattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaa 91  Q
    |||||||| |||||| | |||  |||||||| | ||||||| ||||||||||| || ||||||||||| | |||| ||||||||    
T  16195410 acattatcaatttgaggaaaaaatttcaaatctaaatcaaagcttctcaaggatgattttgatgagttggtaatcctcaaacaa 16195493  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 30462667 - 30462607
Alignment:
Q  8 acattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttga 69  Q
    |||||||||||| || |||||| ||||||||||| |||||| ||||| ||||| ||||||||    
T  30462667 acattatccattagaggcaaagctttcaaatatg-atcaaagcttctaaaggatgaatttga 30462607  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16404484 - 16404559
Alignment:
Q  1 ttcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagtta 76  Q
    |||||| || || ||||||||| | ||||||||||||| ||| ||||||||||||||| | |||||||||| ||||    
T  16404484 ttcaacgacgttctccatttgaggaaaagttttcaaatctgattcaaaacttctcaagaacgaatttgatgtgtta 16404559  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 17743527 - 17743480
Alignment:
Q  44 tcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaa 91  Q
    |||||||||||||||||||||||||||| |||  || |||||||||||    
T  17743527 tcaaaacttctcaaggaagaatttgatgcgttgacactcttcaaacaa 17743480  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 20748230 - 20748140
Alignment:
Q  8 acattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggactct 98  Q
    |||||||||||| ||  ||| |||||||||  ||| ||||| ||||||||| | |||||||||| ||| ||  ||||||||||| ||||||    
T  20748230 acattatccattagagacaacgttttcaaaattgattcaaagcttctcaagaacgaatttgatgtgttggccctcttcaaacaacgactct 20748140  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 17651384 - 17651480
Alignment:
Q  2 tcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggactct 98  Q
    ||||| |||||||||| |||||| ||  ||||||||| ||||  ||| ||| ||||| |||| ||||||||||| || | | |||||||| ||||||    
T  17651384 tcaacgacattatccaattgaagaaatattttcaaatttgaacaaaatcttatcaagaaagattttgatgagttggccagcatcaaacaacgactct 17651480  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 40817403 - 40817446
Alignment:
Q  47 aaacttctcaaggaagaatttgatgagttagcaatcttcaaaca 90  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  40817403 aaacttctcaaggatgaagttgatgagttagcaatcttcaaaca 40817446  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 35104208 - 35104272
Alignment:
Q  34 caaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggactct 98  Q
    ||||| ||||||||| ||||||||| | || ||||||||||| ||||||||||| ||||| ||||    
T  35104208 caaatctgaatcaaagcttctcaagaatgactttgatgagttggcaatcttcaaccaagggctct 35104272  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 10516928 - 10517010
Alignment:
Q  8 acattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaa 91  Q
    ||||||||||||||| |||||| |||||||| | ||||||| |||||  |||| || |||||||||||  ||| ||||||||||    
T  10516928 acattatccatttgaggcaaag-tttcaaatttaaatcaaagcttcttgaggacgattttgatgagttgacaaccttcaaacaa 10517010  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 20706723 - 20706627
Alignment:
Q  1 ttcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatcttcaaacaaggactct 98  Q
    |||||| |||||||||||| || ||||||||| ||||| |  |||||| |||||||| || |||||||||| | |  || ||||||||||| ||||||    
T  20706723 ttcaacgacattatccattagaggcaaagtttacaaat-ttcatcaaagcttctcaaagaggaatttgatgcgctgacactcttcaaacaacgactct 20706627  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14760884 - 14760801
Alignment:
Q  1 ttcaaccacattatccatttgaagcaaagttttcaaatatgaatcaaaacttctcaaggaagaatttgatgagttagcaatctt 84  Q
    |||||| |||||| ||| | || |||||||||| |||| ||||||||| ||| | |||||||| |||||||||||  |||||||    
T  14760884 ttcaacgacattacccaatcgaggcaaagtttttaaatctgaatcaaagcttatgaaggaagattttgatgagttgacaatctt 14760801  T

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