View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10167_low_66 (Length: 203)
Name: NF10167_low_66
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10167_low_66 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 12633 - 12807
Alignment:
| Q |
18 |
tgctgcatagaccttagtgacatggaaaatagagcaaacaataattgttaccttctgcatttgagtacagatttcaataacttcagccagtggggcccaa |
117 |
Q |
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| T |
12633 |
tgctgcatagaccctagtgacatggaaaatagagcaaacaataattgttaccttctgcatttgagtacagatttcaataacttcagccactggtgcccaa |
12732 |
T |
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| Q |
118 |
tcaccaaaatttctctcaataaactgataagcaatgccactctttcccctccctattataaagagtccacccttt |
192 |
Q |
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| T |
12733 |
tcaccaaaatttctctcaataaactgataagcaatgccactctttccattccctattataaagagtccacccttt |
12807 |
T |
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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 27336450 - 27336533
Alignment:
| Q |
109 |
ggggcccaatcaccaaaatttctctcaataaactgataagcaatgccactctttcccctccctattataaagagtccacccttt |
192 |
Q |
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| T |
27336450 |
ggggcccaatcaccaaagttcatctcaataaattggtaagcaatgccagtccttccactccctactatgaagagtccacccttt |
27336533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 29177321 - 29177238
Alignment:
| Q |
109 |
ggggcccaatcaccaaaatttctctcaataaactgataagcaatgccactctttcccctccctattataaagagtccacccttt |
192 |
Q |
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| T |
29177321 |
ggggcccaatcaccaaagttcatctcaataaattggtaagcaatgccagtccttccactccctactatgaagagtccacccttt |
29177238 |
T |
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