View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10167_low_9 (Length: 447)

Name: NF10167_low_9
Description: NF10167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10167_low_9
NF10167_low_9
[»] chr5 (25 HSPs)
chr5 (154-276)||(17325985-17326107)
chr5 (157-274)||(7390206-7390323)
chr5 (153-275)||(138285-138406)
chr5 (155-274)||(16515647-16515766)
chr5 (152-276)||(18873600-18873724)
chr5 (154-276)||(10033686-10033811)
chr5 (152-275)||(33281816-33281937)
chr5 (176-276)||(27351490-27351589)
chr5 (157-275)||(43511759-43511879)
chr5 (157-275)||(3349535-3349652)
chr5 (157-276)||(42291685-42291805)
chr5 (155-275)||(8379246-8379365)
chr5 (159-275)||(10591081-10591196)
chr5 (164-275)||(20976126-20976236)
chr5 (181-244)||(4177372-4177435)
chr5 (177-276)||(17513761-17513860)
chr5 (176-275)||(29156331-29156430)
chr5 (182-244)||(13288615-13288677)
chr5 (157-229)||(5829568-5829640)
chr5 (176-276)||(23069365-23069464)
chr5 (144-276)||(40779331-40779463)
chr5 (176-274)||(13424008-13424106)
chr5 (178-229)||(16061085-16061136)
chr5 (181-267)||(17462992-17463080)
chr5 (155-274)||(26312132-26312247)
[»] chr2 (16 HSPs)
chr2 (144-276)||(13997453-13997585)
chr2 (156-276)||(29480440-29480561)
chr2 (154-276)||(39081536-39081657)
chr2 (154-275)||(36059707-36059828)
chr2 (180-276)||(1419049-1419145)
chr2 (157-276)||(1226071-1226191)
chr2 (157-275)||(17117451-17117568)
chr2 (157-264)||(15457653-15457760)
chr2 (157-276)||(18172748-18172864)
chr2 (153-276)||(31272968-31273089)
chr2 (157-263)||(38985514-38985620)
chr2 (176-275)||(18915877-18915976)
chr2 (176-274)||(12269568-12269667)
chr2 (225-276)||(38599541-38599592)
chr2 (155-234)||(18676113-18676193)
chr2 (203-274)||(36481538-36481607)
[»] chr8 (10 HSPs)
chr8 (159-276)||(42076249-42076366)
chr8 (147-274)||(36514949-36515077)
chr8 (176-276)||(35875039-35875139)
chr8 (203-276)||(3628598-3628671)
chr8 (157-262)||(34523760-34523863)
chr8 (152-275)||(32097976-32098100)
chr8 (157-275)||(12531700-12531819)
chr8 (155-234)||(43926129-43926206)
chr8 (176-229)||(3471785-3471840)
chr8 (177-273)||(30915109-30915208)
[»] chr7 (23 HSPs)
chr7 (144-276)||(36438144-36438275)
chr7 (176-275)||(26633504-26633603)
chr7 (180-276)||(40737829-40737924)
chr7 (156-275)||(42312150-42312270)
chr7 (155-240)||(7369967-7370053)
chr7 (176-276)||(30739264-30739365)
chr7 (157-275)||(1366150-1366267)
chr7 (176-276)||(773707-773806)
chr7 (182-276)||(3799593-3799685)
chr7 (178-274)||(41908320-41908416)
chr7 (144-274)||(41852094-41852221)
chr7 (144-264)||(25610218-25610336)
chr7 (156-276)||(28589948-28590067)
chr7 (176-273)||(40841066-40841165)
chr7 (157-275)||(40001517-40001634)
chr7 (236-276)||(7366827-7366867)
chr7 (169-244)||(32956939-32957014)
chr7 (182-235)||(28105795-28105848)
chr7 (181-234)||(44002762-44002815)
chr7 (176-234)||(7636146-7636206)
chr7 (155-274)||(12251088-12251208)
chr7 (208-276)||(21145496-21145562)
chr7 (176-216)||(26282358-26282398)
[»] chr1 (19 HSPs)
chr1 (155-276)||(24556946-24557063)
chr1 (154-276)||(17674156-17674278)
chr1 (144-274)||(22386628-22386758)
chr1 (144-276)||(44836518-44836649)
chr1 (194-276)||(13120708-13120790)
chr1 (155-276)||(26486178-26486297)
chr1 (144-275)||(37873548-37873680)
chr1 (144-268)||(42740256-42740377)
chr1 (178-276)||(50371275-50371372)
chr1 (156-276)||(15441430-15441550)
chr1 (176-276)||(9777554-9777655)
chr1 (156-275)||(5560625-5560743)
chr1 (180-276)||(27703362-27703453)
chr1 (182-234)||(39080451-39080503)
chr1 (176-275)||(1269692-1269793)
chr1 (155-259)||(30004711-30004815)
chr1 (157-214)||(12971608-12971664)
chr1 (157-227)||(25930791-25930862)
chr1 (205-262)||(33124495-33124551)
[»] chr3 (12 HSPs)
chr3 (154-276)||(46904882-46905004)
chr3 (176-276)||(27303325-27303425)
chr3 (155-276)||(7767206-7767327)
chr3 (144-276)||(51147077-51147210)
chr3 (177-276)||(40151955-40152053)
chr3 (152-276)||(15998424-15998541)
chr3 (180-276)||(19965705-19965801)
chr3 (157-275)||(48626835-48626953)
chr3 (184-234)||(21596516-21596566)
chr3 (155-234)||(25598886-25598965)
chr3 (157-275)||(43905659-43905776)
chr3 (203-274)||(29387605-29387674)
[»] chr4 (12 HSPs)
chr4 (155-274)||(35653783-35653902)
chr4 (176-276)||(24449239-24449339)
chr4 (216-274)||(22423828-22423886)
chr4 (157-275)||(55134350-55134467)
chr4 (151-275)||(34982366-34982489)
chr4 (154-276)||(21791352-21791472)
chr4 (209-276)||(10575380-10575447)
chr4 (176-276)||(26328853-26328955)
chr4 (181-221)||(9925292-9925332)
chr4 (176-261)||(5545483-5545569)
chr4 (155-234)||(53011896-53011975)
chr4 (155-274)||(27632542-27632659)
[»] chr6 (12 HSPs)
chr6 (155-276)||(3748370-3748492)
chr6 (182-275)||(30915191-30915284)
chr6 (176-276)||(6294394-6294496)
chr6 (176-276)||(11088710-11088811)
chr6 (157-275)||(29308273-29308390)
chr6 (203-276)||(21946245-21946317)
chr6 (157-263)||(1092847-1092952)
chr6 (176-276)||(350555-350658)
chr6 (157-235)||(1690523-1690600)
chr6 (176-276)||(19231753-19231865)
chr6 (155-234)||(2618535-2618613)
chr6 (203-274)||(3514702-3514770)
[»] scaffold0034 (1 HSPs)
scaffold0034 (151-235)||(99097-99182)
[»] scaffold0606 (1 HSPs)
scaffold0606 (178-273)||(8246-8336)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 17326107 - 17325985
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17326107 cagtaaaatcaaaacgcaattctttttgtgtagctaaaattcattaaaaaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaataaa 17326008  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||||| ||||||||||||||    
T  17326007 gtgaaagataggtgaaatttacc 17325985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 7390206 - 7390323
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| |||||| |||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  7390206 taaaataaaaacgtaattttttgtgtgtagctaagcttcattaaaaaatcggaatcagaagaacttttaaacataaaacaaaacaaaataaaattaagtg 7390305  T
Q  257 aaagagaggtgaaattta 274  Q
    ||||||||||||||||||    
T  7390306 aaagagaggtgaaattta 7390323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 138406 - 138285
Alignment:
Q  153 tcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatga 252  Q
    |||||||||| |||||| | || |||||||||||||||| ||||||||  ||||| ||||| ||||||||||||||| |||||||||||||||||||| |    
T  138406 tcagtaaaataaaaacg-atttttttttgtgtagctaagtttcattaagaaatcaaaatcaaaagaacttttaaacaggaaacaaaacaaaataaaatta 138308  T
Q  253 agtgaaagagaggtgaaatttac 275  Q
    |||||||||||||||||||||||    
T  138307 agtgaaagagaggtgaaatttac 138285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 16515766 - 16515647
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||| |||||||| || ||| |||||||||||||||||| ||| | ||||||| ||||||||||| ||||| |||||||||||||||||||| |||    
T  16515766 agtaaaataaaaacgcatttttttgtgtgtagctaagcttcatgaaaaagtcagaatgagaagaactttaaaacatgaaacaaaacaaaataaaattaag 16515667  T
Q  255 tgaaagagaggtgaaattta 274  Q
    ||||| ||||||||||||||    
T  16515666 tgaaaaagaggtgaaattta 16515647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 18873724 - 18873600
Alignment:
Q  152 ctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatg 251  Q
    |||| |||||| |||||| |||| || |||||||| ||| |||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||| |     
T  18873724 ctcactaaaataaaaacgtaatttttattgtgtagttaaacttcattaaaaaattagaatcagaaaaacttttaaacatgaaacaaaacaaaataaagtt 18873625  T
Q  252 aagtgaaagagaggtgaaatttacc 276  Q
    |||||||||| ||||||||||||||    
T  18873624 aagtgaaagaaaggtgaaatttacc 18873600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 10033811 - 10033686
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||||| |||| ||||||  |||||||||| |||  ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  10033811 cagtaaaataaaaatgcaatt--ttttgtgtagttaaatttcgttaaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaaataaaataaa 10033714  T
Q  254 -----gtgaaagagaggtgaaatttacc 276  Q
         |||||||||||||||||||||||    
T  10033713 attaagtgaaagagaggtgaaatttacc 10033686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 33281937 - 33281816
Alignment:
Q  152 ctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatg 251  Q
    ||||||||||| |||||||||| |||||||||||| ||| ||||||||||  |||| ||||| |||||||| |||||| ||||||||| | || |||||     
T  33281937 ctcagtaaaataaaaacgcaat-ctttttgtgtagttaaacttcattaaaagatcataatcaaaagaacttctaaacatgaaacaaaatataaaaaaat- 33281840  T
Q  252 aagtgaaagagaggtgaaatttac 275  Q
    ||||||||||||||||||||||||    
T  33281839 aagtgaaagagaggtgaaatttac 33281816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 27351589 - 27351490
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||| |||||| ||||  ||| |||| ||||| ||||||||||||||||||||||||    
T  27351589 tttttgtgtagctaaacttcattaaaaaattcgaatcagaagaacttctaaacatgaaaggaaataaaa-aaaattaagtgaaagagaggtgaaatttac 27351491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 43511879 - 43511759
Alignment:
Q  157 taaaatcaaaacgcaattcttttt--gtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||| ||||||||||| |||||  |||||||||||||| |||||| |||||||||||| ||| ||| |||||| ||||| ||| | || ||||| |||    
T  43511879 taaaataaaaacgcaattttttttttgtgtagctaagctttattaaaaaatcagaatcagcagagcttctaaacatgaaacgaaatacaaaaaaattaag 43511780  T
Q  255 tgaaagagaggtgaaatttac 275  Q
    ||||||||||||  |||||||    
T  43511779 tgaaagagaggtagaatttac 43511759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 3349535 - 3349652
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||  || |||||| ||||| ||| | || ||| |  ||||    
T  3349535 taaaataaaaacgcaatt-tttttgtgtagctaagctttattaaaaaatcagaatcagaagagtttctaaacatgaaactaaatacaaaaaacttgagtg 3349633  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  3349634 aaagagaggtataatttac 3349652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 42291685 - 42291805
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac--aaaacaaaataaaatgaag 254  Q
    |||||| ||||||||||| ||||||||||| ||| ||| || ||| |||||||||||||||| ||| |||||| |||||  || |||||| ||||| |||    
T  42291685 taaaataaaaacgcaatt-tttttgtgtagttaaactttataaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaaaattaag 42291783  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    ||||||||||||  ||||||||    
T  42291784 tgaaagagaggtagaatttacc 42291805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 8379246 - 8379365
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||| |||| | | || ||||||||||| || ||||||||||| ||| || ||||||||| ||| |||||| ||||| ||| |||| || || |||    
T  8379246 agtaaaataaaaatggatttttttttgtgtagttatgcttcattaaaaaataagtatcagaagatcttctaaacatgaaacgaaa-aaaaaaatattaag 8379344  T
Q  255 tgaaagagaggtgaaatttac 275  Q
    |||||||||||||||||||||    
T  8379345 tgaaagagaggtgaaatttac 8379365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 10591081 - 10591196
Alignment:
Q  159 aaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaa 258  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||| |  || |||||| ||||| ||| | || ||||| |||||||    
T  10591081 aaataaaaacgcaatt-tttttgtgtagttaagctttattaaaaaatcagaatcagaatagtttctaaacatgaaacgaaatacaaaaaaattaagtgaa 10591179  T
Q  259 agagaggtgaaatttac 275  Q
    ||||||||  |||||||    
T  10591180 agagaggtagaatttac 10591196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 20976236 - 20976126
Alignment:
Q  164 aaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagaga 263  Q
    ||||||||||| |||||||||||||| |||| |||||| ||||| |||||||||| ||||||||||   ||| ||| | || ||||| ||||||||||||    
T  20976236 aaaacgcaatt-tttttgtgtagctatgctttattaaaaaatcataatcagaagagcttttaaacattgaaccaaatacaaaaaaattaagtgaaagaga 20976138  T
Q  264 ggtgaaatttac 275  Q
    |||  |||||||    
T  20976137 ggtagaatttac 20976126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 4177435 - 4177372
Alignment:
Q  181 gtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaa 244  Q
    |||||| |||||||||||||| ||||| |||||||||||||| |||||| ||||||||| ||||    
T  4177435 gtgtagttaagcttcattaaaaaatcataatcagaagaacttctaaacatgaaacaaaataaaa 4177372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 17513761 - 17513860
Alignment:
Q  177 ttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||| ||||||| |||||| ||  |||||||||||| ||| |||||| ||||| ||| | || ||||| |||||||||||||||  ||||||||    
T  17513761 ttttgtgtagttaagctttattaaaaaaatagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttacc 17513860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 29156430 - 29156331
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||||||||||||| ||| |||||| ||||| |||||| ||| ||| |||||| ||||||||| | || ||||| || ||||||||||||  |||||||    
T  29156430 tttttgtgtagctaaactttattaaaaaatcaaaatcagtagagcttctaaacatgaaacaaaatacaaaaaaattaattgaaagagaggtagaatttac 29156331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 13288677 - 13288615
Alignment:
Q  182 tgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaa 244  Q
    |||||||||| ||||||||| ||||| |||||||||||| |||||||| ||||||||| ||||    
T  13288677 tgtagctaagtttcattaaaaaatcataatcagaagaacatttaaacatgaaacaaaataaaa 13288615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 5829640 - 5829568
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaaca 229  Q
    |||||| |||| |||||| ||||| ||||||||| ||| |||||| |||||||||||||||| ||| ||||||    
T  5829640 taaaataaaaatgcaattttttttttgtagctaaactttattaaaaaatcagaatcagaagagcttctaaaca 5829568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 23069464 - 23069365
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||| |||||||||||||||||||| ||||| ||| |||||||||| |||| | |||||  || |||| ||||| || ||||||| | |||||||||||    
T  23069464 tttttttgtagctaagcttcattaaaaaatcaaaattagaagaacttctaaatatgaaacgtaataaaa-aaaattaaatgaaagaaatgtgaaatttac 23069366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 40779463 - 40779331
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatc--agaatcagaagaacttttaaacacgaaacaaaaca 241  Q
    |||||| ||||  |||||| |||||| |||| ||| ||||||| ||| |||||||||| ||    ||||| ||||||| ||||||||| ||||  ||| |    
T  40779463 aaataggcctctataaaataaaaacgtaatt-tttgtgtgtagttaaacttcattaaaaaaaactagaataagaagaaattttaaacatgaaatgaaata 40779365  T
Q  242 aaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||| ||||| |||||||||||||||||||||||||    
T  40779364 aaa-aaaattaagtgaaagagaggtgaaatttacc 40779331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 13424106 - 13424008
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaa--tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattt 273  Q
    ||||||||||| |||  ||||||||| ||  ||||||||||||||||||||||||| ||||  ||  |||| ||||| |||||||  |||||||||||||    
T  13424106 tttttgtgtagttaaatttcattaaaaaaaatcagaatcagaagaacttttaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaattt 13424009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 16061136 - 16061085
Alignment:
Q  178 tttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaaca 229  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||    
T  16061136 tttgtgtagttaagcttcattaaaaaatcagaatcagaaaaaattctaaaca 16061085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 17463080 - 17462992
Alignment:
Q  181 gtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaa--aataaaatgaagtgaaagagaggtg 267  Q
    |||||| |||||||||||||| ||  ||||| |||||||||| |||||| ||||| ||| ||  || ||||| ||| ||||||||||||    
T  17463080 gtgtagttaagcttcattaaaaaactagaattagaagaacttctaaacatgaaacgaaataaataaaaaaattaagcgaaagagaggtg 17462992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 26312247 - 26312132
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa-tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    |||||||| |||||| |||| |||||||||||||||  ||||||||| || ||||||||||||||| || |||||| ||||  ||  |||| ||||| ||    
T  26312247 agtaaaat-aaaacgtaatt-tttttgtgtagctaaatttcattaaaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaa-aaaattaa 26312151  T
Q  254 gtgaaagagaggtgaaattta 274  Q
    |||||  ||||||||||||||    
T  26312150 gtgaa--agaggtgaaattta 26312132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 13997585 - 13997453
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||    
T  13997585 aaataggccacagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaaaaatcagaatcagaagaacttttaaacacaaaacaaaataaa 13997486  T
Q  244 ataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    | || || |||||||||||| ||||||||||||    
T  13997485 acaagattaagtgaaagagatgtgaaatttacc 13997453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 29480440 - 29480561
Alignment:
Q  156 gtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa-tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  29480440 gtaaaatcaaaatgcaattctttttgtgtacctaatcttcattaaaaaaatcagaatcagaagaacttttaaatacgaaacaaaacaaaataaaattaag 29480539  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    ||||||||||||||| ||||||    
T  29480540 tgaaagagaggtgaactttacc 29480561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 39081657 - 39081536
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||||| |||||  |||| ||||||||||| |||||||||||| | ||||||||||| ||||||||||||| | |||||||||||||||||||| ||    
T  39081657 cagtaaaataaaaacataatt-tttttgtgtagttaagcttcattataaaatcagaatcataagaacttttaaatatgaaacaaaacaaaataaaattaa 39081559  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||||    
T  39081558 gtgaaagagaggtgaaatttacc 39081536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 36059707 - 36059828
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||||| ||||||||||| ||||| ||||||||| |||||||||| ||||||| ||| |||||||| |||||| ||||||||| |||||||||| ||    
T  36059707 cagtaaaataaaaacgcaattttttttttgtagctaaacttcattaaaaaatcagattcacaagaacttctaaacatgaaacaaaataaaataaaattaa 36059806  T
Q  254 gtgaaagagaggtgaaatttac 275  Q
    ||||||||||||| ||||||||    
T  36059807 gtgaaagagaggtaaaatttac 36059828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 1419145 - 1419049
Alignment:
Q  180 tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||| |||  ||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  1419145 tgtgtagttaaatttcattaaaaagtcaaaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaagtgaaatttacc 1419049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 1226071 - 1226191
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa-tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagt 255  Q
    |||||| |||||  |||| ||||||||||||||| |||||||||| || ||||||| |||||||||| |||||| ||||| ||| |||| ||||| ||||    
T  1226071 taaaataaaaacataattttttttgtgtagctaaacttcattaaaaaaatcagaattagaagaacttctaaacatgaaacgaaataaaaaaaaattaagt 1226170  T
Q  256 gaaagagaggtgaaatttacc 276  Q
    ||||||||| |||||||||||    
T  1226171 gaaagagagatgaaatttacc 1226191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 17117451 - 17117568
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| |||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||| ||| | || ||||| |||||    
T  17117451 taaaataaaaatgcaatt-tttttgtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 17117549  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  17117550 aaagagaggtagaatttac 17117568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 15457760 - 15457653
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||| ||||| ||| |||||| ||| | |||| ||||| ||| | || ||||| |||||    
T  15457760 taaaataaaaacacaattctttttgtgtagctaagctttattaaaaaatcaaaataagaagagcttctgaacatgaaacgaaaaacaaaaaaattaagtg 15457661  T
Q  257 aaagagag 264  Q
    ||||||||    
T  15457660 aaagagag 15457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 18172748 - 18172864
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||  || |||||| ||||| ||| | || |||||   |||    
T  18172748 taaaataaaaacgcaatt-tttttgtgtagccaagctttattaaaaaatcagaatcagaagagtttctaaacatgaaacgaaatacaaaaaaat--tgtg 18172844  T
Q  257 aaagagaggtgaaatttacc 276  Q
    ||||||||||  ||||||||    
T  18172845 aaagagaggtagaatttacc 18172864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 31272968 - 31273089
Alignment:
Q  153 tcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatga 252  Q
    |||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| |||||||||||||| |||| |  |||| ||  || | ||||| |    
T  31272968 tcagtaaaataaaaacgaaatt-tttttgtggagttaagcttcattaaaaaatcaaaatcagaagaacttctaaaaattaaacgaattaaga-aaaatta 31273065  T
Q  253 agtgaaagagaggtgaaatttacc 276  Q
    || |||||||| ||||||||||||    
T  31273066 agcgaaagagaagtgaaatttacc 31273089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 38985514 - 38985620
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| |||||| |||| ||| ||||||| ||||||| |||||| ||||||||||||||||  || |||| | ||||| ||| | || ||||| |||||    
T  38985514 taaaataaaaacgtaattttttgtgtgtagttaagctttattaaaaaatcagaatcagaagagtttctaaaaatgaaacgaaatacaaaaaaattaagtg 38985613  T
Q  257 aaagaga 263  Q
    |||||||    
T  38985614 aaagaga 38985620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 18915877 - 18915976
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    |||||||| || ||||||| |||||| ||  |||||||||||| ||| |||||| ||||| ||| | || ||||| |||||||||||||||  |||||||    
T  18915877 tttttgtgcagttaagctttattaaaaaaatagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttac 18915976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 12269667 - 12269568
Alignment:
Q  176 tttttgtgtagctaagcttcattaaac---aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatt 272  Q
    |||||||||||||||  |||||||||    |||||||||||||||||||| |||||| ||||  ||  |||| ||||| |||||||  ||||||||||||    
T  12269667 tttttgtgtagctaaatttcattaaaagaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatt 12269570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 38599592 - 38599541
Alignment:
Q  225 aaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||| |||| |||| |||||||||| ||||||||||||| |||||||||||    
T  38599592 aaacatgaaataaaataaaataaaattaagtgaaagagagatgaaatttacc 38599541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 18676113 - 18676193
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa---tcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||| |||||| |||| |||||||||||||||  ||||||||| ||   |||||||||||||||||| |||||| ||||    
T  18676113 agtaaaat-aaaacgtaatt-tttttgtgtagctaaatttcattaaaaaaaaatcagaatcagaagaacttctaaacatgaaa 18676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 36481607 - 36481538
Alignment:
Q  203 aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattta 274  Q
    |||||||||||||||||||| |||||| ||||  ||  |||| ||||| |||||||  ||||||||||||||    
T  36481607 aatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaattta 36481538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 42076366 - 42076249
Alignment:
Q  159 aaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaa 258  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  42076366 aaatcaaaacgcaattctttttgtgtagataagcttcattaaaaaatcagaatcaaaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaa 42076267  T
Q  259 agagaggtgaaatttacc 276  Q
    ||| ||||||||||||||    
T  42076266 agataggtgaaatttacc 42076249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 36514949 - 36515077
Alignment:
Q  147 tagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagctt-cattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaat 245  Q
    ||||| |||||||||||||||||||||||| ||| || |||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36514949 tagacttcagtaaaatcaaaacgcaattctctttttgcagctcagttttcattaaaaaatcagaatcagaagaacttttaaacacgaaacaaaacaaaat 36515048  T
Q  246 aaaatgaagtgaaagagaggtgaaattta 274  Q
    ||||| ||||||||||||| |||||||||    
T  36515049 aaaattaagtgaaagagagctgaaattta 36515077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 35875139 - 35875039
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||||||| | |||||    
T  35875139 tttttgtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaagtgaacgagaggtggagtttac 35875040  T
Q  276 c 276  Q
    |    
T  35875039 c 35875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 3628598 - 3628671
Alignment:
Q  203 aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  3628598 aatcagaatcaaaagaacttttaaacatgaaagaaaacaaaataaaattaagtgaaagagaggtgaaatttacc 3628671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 34523760 - 34523863
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||| ||| | || ||||| |||||    
T  34523760 taaaataaaaacgcaatt-tttttgtgtagctaagctttattaaa-aatcagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 34523857  T
Q  257 aaagag 262  Q
    ||||||    
T  34523858 aaagag 34523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 32097976 - 32098100
Alignment:
Q  152 ctcagtaaaatcaaaacgcaattctttttgt-gtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaat 250  Q
    ||||||||||| |||||| |||| ||||| | ||| |||||| |||||||| ||||  ||||||| |||||| |||||| ||||| ||| |||| |||||    
T  32097976 ctcagtaaaataaaaacgtaatttttttttttgtaactaagcatcattaaaaaatcgaaatcagatgaacttctaaacatgaaacgaaataaaaaaaaat 32098075  T
Q  251 gaagtgaaagagaggtgaaatttac 275  Q
     |||||||||||| |||||||||||    
T  32098076 taagtgaaagagaagtgaaatttac 32098100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 12531819 - 12531700
Alignment:
Q  157 taaaatcaaaacgcaattctttt-tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagt 255  Q
    |||||| ||||| ||||| |||| ||||||||||||||| |||||| ||||||||| |||||| ||| |||||| ||||| ||| | || ||||| ||||    
T  12531819 taaaataaaaacacaatttttttgtgtgtagctaagctttattaaaaaatcagaataagaagagcttctaaacatgaaacgaaatataaaaaaattaagt 12531720  T
Q  256 gaaagagaggtgaaatttac 275  Q
    |||||||||||  |||||||    
T  12531719 gaaagagaggtataatttac 12531700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 43926129 - 43926206
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||| |||||| |||| |||||||||||||||  |||| |||| ||||||||||||||||| || |||||| ||||    
T  43926129 agtaaaat-aaaacgtaatt-tttttgtgtagctaaatttcactaaaaaatcagaatcagaagaagttctaaacatgaaa 43926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 3471840 - 3471785
Alignment:
Q  176 tttttgtgtagctaagcttcatt--aaacaatcagaatcagaagaacttttaaaca 229  Q
    ||||||||||||||| |||||||  ||| ||||||||||| |||||||| ||||||    
T  3471840 tttttgtgtagctaaacttcattaaaaaaaatcagaatcataagaacttctaaaca 3471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 30915109 - 30915208
Alignment:
Q  177 ttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac--aaaacaaaataa-aatgaagtgaaagagaggtgaaattt 273  Q
    |||| ||||| |||| ||||||||| ||||| |||||||||||| | |||| | |||||  || | ||||||| ||| ||||||||||||| ||||||||    
T  30915109 ttttatgtagttaagtttcattaaaaaatcataatcagaagaacgtctaaaaatgaaacgaaataaaaaataataattaagtgaaagagagttgaaattt 30915208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 36438144 - 36438275
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    |||||| |||||||||||| |||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  36438144 aaataggcctcagtaaaataaaaatgcaatt-tttgtgtgtagctaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaa 36438242  T
Q  244 ataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||| |||||||||| ||||||||||||||    
T  36438243 ataaaattaagtgaaagataggtgaaatttacc 36438275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 26633603 - 26633504
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  26633603 tttttgtgtagctaagcttcattaaaaaatcagaatcagaagaacgtctaaacatgaaacaaaataaaataaaattaagtgaaagagaggtgaaatttac 26633504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 40737829 - 40737924
Alignment:
Q  180 tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||    
T  40737829 tgtgtagctaagcttcattaaaaagtcagaatcaaaagaacttttaaa-atgaaacaaaataaaataaaataaagtgaaagagaggtgaaatttacc 40737924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 42312270 - 42312150
Alignment:
Q  156 gtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac-aaaacaaaataaaatgaag 254  Q
    ||||||| ||||| ||||| ||| ||||||| |||||||||||||| ||| |||||||||||||||| |||||| ||||| |||  |||| ||||| |||    
T  42312270 gtaaaataaaaacacaattttttgtgtgtagttaagcttcattaaaaaattagaatcagaagaacttctaaacatgaaacgaaataaaaaaaaaattaag 42312171  T
Q  255 tgaaagagaggtgaaatttac 275  Q
    |||||||||||||||||||||    
T  42312170 tgaaagagaggtgaaatttac 42312150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 7370053 - 7369967
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcatt-aaacaatcagaatcagaagaacttttaaacacgaaacaaaac 240  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||    
T  7370053 agtaaaatcaaaacgcaattcttcttgtgtaactaagcttcattaaaaaaatcagaatcagaaaaacttttaaatacgaaacaaaac 7369967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 30739365 - 30739264
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaat-gaagtgaaagagaggtgaaattta 274  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| || ||| ||||  ||| ||||||||||  |||||||||||||||||||||||    
T  30739365 tttttgtgtagctaaacttcattaaaaaatcagaatcagaagaacttctatacatgaaatgaaataaaataaaataaaagtgaaagagaggtgaaattta 30739266  T
Q  275 cc 276  Q
    ||    
T  30739265 cc 30739264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 1366267 - 1366150
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| |||||| |||| ||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||| ||| | || ||||| |||||    
T  1366267 taaaataaaaacgtaatt-tttttgtgtagctaagctttattaaaaaatcagaatcagaagagcttgtaaacatgaaacgaaatacaaaaaaattaagtg 1366169  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  1366168 aaagagaggtagaatttac 1366150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 773707 - 773806
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||| ||||| |||||||||||||| ||||| |||||||||||||| |||||| ||||| ||| |||| ||||| |||||||||||| |||||||||||    
T  773707 tttttatgtagttaagcttcattaaaaaatcaaaatcagaagaacttctaaacatgaaacgaaataaaa-aaaattaagtgaaagagatgtgaaatttac 773805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 3799593 - 3799685
Alignment:
Q  182 tgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||||| ||||||| || |||||||||||||||||||| |||||| ||||| ||| |||  ||||| |||||||||||||||||||||||||    
T  3799593 tgtagctaaacttcatttaaaaatcagaatcagaagaacttctaaacatgaaacgaaataaa--aaaattaagtgaaagagaggtgaaatttacc 3799685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 41908416 - 41908320
Alignment:
Q  178 tttgtgtagctaagcttcattaaacaa-tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattta 274  Q
    |||||||| ||||||||||||||| || |||||||||||| ||||| |||||| ||||||||| |||| ||||| |||||||| ||||||||||||||    
T  41908416 tttgtgtaactaagcttcattaaaaaaatcagaatcagaaaaacttctaaacatgaaacaaaataaaa-aaaattaagtgaaaaagaggtgaaattta 41908320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 41852094 - 41852221
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    ||||||||| | ||||||| |||||| ||||  ||| ||||||||||| ||||||||  ||||||||||||||||||||||||||   |||| ||| |||    
T  41852094 aaatagaccccggtaaaataaaaacgtaattgattt-gtgtagctaagtttcattaagaaatcagaatcagaagaacttttaaacgtcaaacgaaataaa 41852192  T
Q  244 ataaaatgaagtgaaagagaggtgaaattta 274  Q
      ||||| |||||||||||| ||||||||||    
T  41852193 --aaaattaagtgaaagagatgtgaaattta 41852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 25610336 - 25610218
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    ||||||||| || |||||| |||| |||||| |||||||  |||||||||| |||||| |||||||||||||||| |||  ||||| ||||| ||| | |    
T  25610336 aaatagaccccaataaaataaaaatgcaattttttttgt--agctaagctttattaaaaaatcagaatcagaagagcttccaaacatgaaacgaaataca 25610239  T
Q  244 ataaaatgaagtgaaagagag 264  Q
    | ||||| |||||||||||||    
T  25610238 aaaaaattaagtgaaagagag 25610218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 28589948 - 28590067
Alignment:
Q  156 gtaaaatcaaaacgcaattctttt-tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    ||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||||||||||||||| || |||||| ||||  ||| | |  ||||| |||    
T  28589948 gtaaaataaaaacgtaatttttttttgtgtagctaaacttcattaaaaaatcagaatcagaagaatttctaaacatgaaatgaaataga--aaaattaag 28590045  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    || |||||||||||| ||||||    
T  28590046 tggaagagaggtgaattttacc 28590067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 40841066 - 40841165
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaa--tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattt 273  Q
    ||||||||||||||||||| |||||| ||  ||||||| |||||||||| |||||| ||||| ||| |||| ||||  || ||||||| |||||||||||    
T  40841066 tttttgtgtagctaagctttattaaaaaaaatcagaattagaagaacttctaaacatgaaacgaaataaaaaaaaaataattgaaagataggtgaaattt 40841165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 40001517 - 40001634
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| |||| |||||| ||||||||||| ||||||| |||| | ||  ||||| |||||| ||| |||||| ||||| ||| | || ||||| |||||    
T  40001517 taaaataaaaatgcaatt-tttttgtgtagttaagctttattagaaaaatagaattagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 40001615  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||| |||||||    
T  40001616 aaagagaggtggaatttac 40001634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 7366867 - 7366827
Alignment:
Q  236 aaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7366867 aaaacaaaataaaattaagtgaaagagaggtgaaatttacc 7366827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 32957014 - 32956939
Alignment:
Q  169 gcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaa 244  Q
    |||||| |||||||| ||||||||||||||||| ||||| || || |||||||| |||||| ||||| ||| ||||    
T  32957014 gcaattttttttgtgaagctaagcttcattaaaaaatcaaaaccaaaagaacttctaaacatgaaaccaaaaaaaa 32956939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 28105848 - 28105795
Alignment:
Q  182 tgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac 235  Q
    |||||||||||||||||||  ||| |||||||||| |||||||||||| |||||    
T  28105848 tgtagctaagcttcattaagaaattagaatcagaaaaacttttaaacatgaaac 28105795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 44002762 - 44002815
Alignment:
Q  181 gtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaa 234  Q
    ||||||||||||||||||||| ||| | |||||||||||||| |||||| ||||    
T  44002762 gtgtagctaagcttcattaaaaaattataatcagaagaacttctaaacatgaaa 44002815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 7636146 - 7636206
Alignment:
Q  176 tttttgtgtagctaagcttcatt--aaacaatcagaatcagaagaacttttaaacacgaaa 234  Q
    ||||||||||||||| |||||||  ||| |||||||||||||| ||||| |||||| ||||    
T  7636146 tttttgtgtagctaaacttcattgaaaaaaatcagaatcagaacaacttctaaacatgaaa 7636206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 12251088 - 12251208
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa-----tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaa 249  Q
    |||||||| |||||| |||| |||||||||||||||  ||||||||| ||     |||||||||||||||||| |||||| ||||  ||  |||| ||||    
T  12251088 agtaaaat-aaaacgtaatt-tttttgtgtagctaaatttcattaaaaaaaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaa 12251185  T
Q  250 tgaagtgaaagagaggtgaaattta 274  Q
    | |||||||  ||||||||||||||    
T  12251186 ttaagtgaa--agaggtgaaattta 12251208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 21145562 - 21145496
Alignment:
Q  208 gaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||| ||||||||||||| ||| ||||| ||| ||||  |||| ||||||||| |||||||||||||||    
T  21145562 gaattagaagaacttttatacatgaaacgaaataaaa--aaattaagtgaaagggaggtgaaatttacc 21145496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 26282358 - 26282398
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaa 216  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  26282358 tttttgtgtagttaagctttattaaaaaatcagaatcagaa 26282398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 24557063 - 24556946
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||  |||||||||||||||||| |||    
T  24557063 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattgaaaaattagaatcagaagaacttttaaacac--aacaaaacaaaataaaattaag 24556966  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    ||||  ||||||||||||||||    
T  24556965 tgaa--agaggtgaaatttacc 24556946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 17674156 - 17674278
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||| ||    
T  17674156 cagtaaaatcaaaacacaattctttttgtgtagttaaacttcattaaaaagtcatattcagaagaacttttaaacacgaaacaaaacaaaataaaattaa 17674255  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||| | ||||||||||||||    
T  17674256 gtgaaaaataggtgaaatttacc 17674278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 22386628 - 22386758
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    |||||| || |||||||||||||| |||||| ||||| ||||| |||| ||||||||| ||||||||||| ||||  ||||||||||||||||||| |||    
T  22386628 aaataggccgcagtaaaatcaaaatgcaattttttttttgtagttaagtttcattaaaaaatcagaatcataagattttttaaacacgaaacaaaataaa 22386727  T
Q  244 ataaaatgaagtgaaagagaggtgaaattta 274  Q
    ||||||| |||||||||||| ||||||||||    
T  22386728 ataaaattaagtgaaagagatgtgaaattta 22386758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 44836518 - 44836649
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    ||||| |||| |||||||| ||||||||||| ||| |||||||||||| || |||||| ||| ||||||| ||||||||||||||| ||||||||| |||    
T  44836518 aaataaacctaagtaaaataaaaacgcaattttttctgtgtagctaagttt-attaaaaaattagaatcataagaacttttaaacatgaaacaaaataaa 44836616  T
Q  244 ataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||| |||||||||||| ||||||||||||    
T  44836617 ataaaattaagtgaaagagatgtgaaatttacc 44836649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 13120708 - 13120790
Alignment:
Q  194 tcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  13120708 tcattaaaaaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaattaagtgatagagaggtgaaatttacc 13120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 26486178 - 26486297
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||| |||| ||| || ||| ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||| ||     
T  26486178 agtaaaataaaaatgcatttttttgtgtgtagctaagcttcatttaaaaatcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaat 26486277  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    ||||  ||||||||||||||||    
T  26486278 tgaa--agaggtgaaatttacc 26486297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 37873548 - 37873680
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    |||||| || ||||||||| |||| | |||| ||| ||||||| |||||||||||||| ||| ||||||| ||||||||||||||| ||||||||  |||    
T  37873548 aaataggccccagtaaaataaaaatgtaattttttgtgtgtagttaagcttcattaaaaaattagaatcataagaacttttaaacatgaaacaaactaaa 37873647  T
Q  244 at-aaaatgaagtgaaagagaggtgaaatttac 275  Q
    || ||||| ||||||||||||||||||||||||    
T  37873648 ataaaaattaagtgaaagagaggtgaaatttac 37873680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 42740377 - 42740256
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa 243  Q
    |||||| || ||||||||| |||||| |||| ||||||||| | ||| |||||||||| ||||||||   |||||||||||||||| |||||||||||||    
T  42740377 aaataggccccagtaaaataaaaacgtaattttttttgtgtggttaaacttcattaaaaaatcagaa---gaagaacttttaaacatgaaacaaaacaaa 42740281  T
Q  244 ataaaatgaagtgaaagagaggtga 268  Q
    ||||||| |||||||||| ||||||    
T  42740280 ataaaattaagtgaaagataggtga 42740256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 50371372 - 50371275
Alignment:
Q  178 tttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  50371372 tttgtgtagctaagcttcattaaaaaatcagaatcataagaacttctaaacatgaaacgaaataaaa-aaaattaagtgaaagagaggtgaaatttacc 50371275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 15441550 - 15441430
Alignment:
Q  156 gtaaaatcaaaacgcaattctttttgtgtagct--aagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||| ||||||||||| ||||||||||  |  ||||||||||||| ||||| |||||||||||||| |||||| |||||  || |||| ||||| ||    
T  15441550 gtaaaataaaaacgcaattttttttgtgtatatttaagcttcattaaaaaatcaaaatcagaagaacttctaaacatgaaacggaataaaa-aaaat-aa 15441453  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||||    
T  15441452 gtgaaagagaggtgaaatttacc 15441430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 9777655 - 9777554
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaa-tgaagtgaaagagaggtgaaattta 274  Q
    ||||| ||||||||| |||||||||| ||||||||| |||| ||||| |||||| ||||| ||| |||| |||| | |||||||||||| ||||||||||    
T  9777655 tttttttgtagctaaacttcattaaaaaatcagaattagaataacttctaaacatgaaactaaataaaaaaaaaattaagtgaaagagaagtgaaattta 9777556  T
Q  275 cc 276  Q
    ||    
T  9777555 cc 9777554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 5560743 - 5560625
Alignment:
Q  156 gtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa-ataaaatgaag 254  Q
    ||||||| ||||||||||| ||||| ||| ||||| ||||||||||  ||| |||||| |||||||| |||||| ||||||||| ||| | ||||  |||    
T  5560743 gtaaaataaaaacgcaattttttttttgtggctaaacttcattaaaagatctgaatcaaaagaacttctaaacatgaaacaaaataaataaaaaaataag 5560644  T
Q  255 tgaaagagaggtgaaatttac 275  Q
    |||||||||  ||||||||||    
T  5560643 tgaaagaga--tgaaatttac 5560625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 27703362 - 27703453
Alignment:
Q  180 tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    ||||||| |||||||  ||||| ||||||||||| || ||||| |||||| |     |||| ||||||||| ||||||| |||||||||||||||||    
T  27703362 tgtgtagttaagctttgttaaaaaatcagaatcataataacttctaaacatg-----aaacgaaataaaattaagtgaaggagaggtgaaatttacc 27703453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 39080451 - 39080503
Alignment:
Q  182 tgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaa 234  Q
    ||||||||||||||||| || ||||||||||| |||||||| |||||| ||||    
T  39080451 tgtagctaagcttcattgaaaaatcagaatcataagaacttctaaacatgaaa 39080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 1269793 - 1269692
Alignment:
Q  176 tttttgtgtagctaagcttc-attaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataa--aatgaagtgaaagagaggtgaaatt 272  Q
    ||||||||||| |||||||  |||||| |||||||||||  ||||||| |||||| ||||| ||| |||| ||  ||| |||||||||| ||||||||||    
T  1269793 tttttgtgtagttaagcttttattaaaaaatcagaatcaatagaacttctaaacatgaaacgaaataaaaaaattaat-aagtgaaagaaaggtgaaatt 1269695  T
Q  273 tac 275  Q
    |||    
T  1269694 tac 1269692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 30004711 - 30004815
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaac--aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatga 252  Q
    |||||||| |||||| |||| ||||||||||||||| ||||||| ||   |||||||||||||||||||| |||||| ||||  ||  |||| ||||| |    
T  30004711 agtaaaat-aaaacgtaatt-tttttgtgtagctaaacttcattgaattaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaatta 30004808  T
Q  253 agtgaaa 259  Q
    |||||||    
T  30004809 agtgaaa 30004815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 12971664 - 12971608
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcag 214  Q
    |||||| ||||||||||| ||||||| ||||||| ||| |||||| ||||||||||||    
T  12971664 taaaataaaaacgcaatt-tttttgtatagctaaactttattaaaaaatcagaatcag 12971608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 25930862 - 25930791
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcatt--aaacaatcagaatcagaagaacttttaaa 227  Q
    |||||| |||||| |||| ||||||||||||||| |||||||  ||| |||||||||||||||| ||| ||||    
T  25930862 taaaataaaaacgtaatt-tttttgtgtagctaaacttcattaaaaaaaatcagaatcagaagagcttctaaa 25930791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 33124495 - 33124551
Alignment:
Q  205 tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagag 262  Q
    ||||||||||||||||||||||||| ||||| ||  |||| ||||| |||||||||||    
T  33124495 tcagaatcagaagaacttttaaacatgaaacgaattaaaa-aaaattaagtgaaagag 33124551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 46905004 - 46904882
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    ||||||||| ||||  ||||| ||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||    
T  46905004 cagtaaaataaaaattcaattttttatgtgtagcgaagcttcattaaaaaatcagaataagaagaacttttaaacatgaaacaaaacaaaataaaattaa 46904905  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||||    
T  46904904 gtgaaagagaggtgaaatttacc 46904882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 27303425 - 27303325
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27303425 tttttgtatagttaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttac 27303326  T
Q  276 c 276  Q
    |    
T  27303325 c 27303325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 7767327 - 7767206
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    ||||| || |||||||| || ||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||| |||    
T  7767327 agtaagataaaaacgcatttttttgtgtgtagctaagcttcattaaaaagtcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaag 7767228  T
Q  255 tgaaagagaggtgaaatttacc 276  Q
    ||||||||| ||||||||||||    
T  7767227 tgaaagagatgtgaaatttacc 7767206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 51147210 - 51147077
Alignment:
Q  144 aaatagacctcagtaaaatcaaaacgcaattcttttt-gtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaa 242  Q
    ||||||||| || |||||| |||| | |||| ||||| | |||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  51147210 aaatagaccccaataaaattaaaatgtaatttttttttgcgtaggtaagcttcattaaaaaatcataatcagaagaactcttaaacacgaaacaaaacaa 51147111  T
Q  243 aataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||||||||||| | |||||||||    
T  51147110 aataaaatgaagtgaaagagagataaaatttacc 51147077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 40151955 - 40152053
Alignment:
Q  177 ttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||| |||||||||||||| ||||||||||| || |||||||||| | ||||| ||| |||| ||||| || ||||||||||||||||||||||    
T  40151955 ttttgtgtagttaagcttcattaaaaaatcagaatcataaaaacttttaaatatgaaacgaaataaaa-aaaattaaatgaaagagaggtgaaatttacc 40152053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 15998541 - 15998424
Alignment:
Q  152 ctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatg 251  Q
    ||||||||||| ||||||||||| |||||||||| |||| ||||||||||     | ||||| |||||||| |||||| ||||| ||||| |  |||||     
T  15998541 ctcagtaaaataaaaacgcaattatttttgtgtaactaaacttcattaaa-----aaaatcataagaacttctaaacatgaaacgaaacaga--aaaatt 15998449  T
Q  252 aagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||| ||||||||||||    
T  15998448 aagtgaaagagatgtgaaatttacc 15998424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 19965705 - 19965801
Alignment:
Q  180 tgtgtagctaagcttcattaaaca-atcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||  ||||||||||| | |||| |||||||||||||| |||||| ||||  ||| |||| ||||| |||||||||||||||||||||||||    
T  19965705 tgtgtagctttgcttcattaaaaatatcaaaatcagaagaacttctaaacatgaaaggaaataaaaaaaaat-aagtgaaagagaggtgaaatttacc 19965801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 48626835 - 48626953
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac--aaaacaaaataaaatgaag 254  Q
    |||||| ||||||||||| ||||||||||| ||| ||| || ||| ||| |||||||||||| ||| |||||| |||||  || |||||| ||||| |||    
T  48626835 taaaataaaaacgcaatt-tttttgtgtagttaaactttataaaaaaattagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaaaat-aag 48626932  T
Q  255 tgaaagagaggtgaaatttac 275  Q
    ||||||||||||  |||||||    
T  48626933 tgaaagagaggtagaatttac 48626953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 21596566 - 21596516
Alignment:
Q  184 tagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||| ||||    
T  21596566 tagctaagcttcattaaaaaatcagaatcaaaagaacttctaaacatgaaa 21596516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 25598886 - 25598965
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa--tcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||| |||||| |||| ||||||||||||||| |||||||||| ||  |||||||||||||||||| |||||| ||||    
T  25598886 agtaaaat-aaaacgtaatt-tttttgtgtagctaaacttcattaaaaaaaatcagaatcagaagaacttctaaacatgaaa 25598965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 43905659 - 43905776
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| ||||||||| | ||||||| | |||| ||  ||||||| |||| ||| |||||| ||||| ||| | || ||||| |||||    
T  43905659 taaaataaaaacgcaatt-tttttgtgttgttaagctttactaaaaaaatagaatcataagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 43905757  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  43905758 aaagagaggtagaatttac 43905776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 29387605 - 29387674
Alignment:
Q  203 aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattta 274  Q
    |||||||||||||||||||| |||||| |||| ||   |||| ||||| |||||||  ||||||||||||||    
T  29387605 aatcagaatcagaagaacttataaacatgaaagaattaaaaaaaaaattaagtgaa--agaggtgaaattta 29387674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 35653783 - 35653902
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaag 254  Q
    |||||||| ||||| || || ||| ||||||| |||||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||| |||    
T  35653783 agtaaaataaaaacacatttttttgtgtgtagttaagcttcattaaaaagtccgaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaag 35653882  T
Q  255 tgaaagagaggtgaaattta 274  Q
    ||||||||||||||||||||    
T  35653883 tgaaagagaggtgaaattta 35653902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 24449339 - 24449239
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||||||| | |||||    
T  24449339 tttttgtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaagtgaacgagaggtggagtttac 24449240  T
Q  276 c 276  Q
    |    
T  24449239 c 24449239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 22423886 - 22423828
Alignment:
Q  216 agaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattta 274  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  22423886 agaacttttaaacatgaaacaaaacaaaataaaattaagtgaaacagaggtgaaattta 22423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 55134467 - 55134350
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||| ||||| ||||||||||||||||||| |||||| |||||| |||| |||| ||| |||||| ||||| ||| | || ||||| |||||    
T  55134467 taaaataaaaacacaatt-tttttgtgtagctaagctttattaaaaaatcaggatcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 55134369  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  55134368 aaagagaggtagaatttac 55134350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 34982489 - 34982366
Alignment:
Q  151 cctcagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaat 250  Q
    ||||| |||||| |||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||| || ||||||  |||| ||| | || |||||    
T  34982489 cctcaataaaataaaaatgcaattttttttgtgtagttaagctttattaaa-aatcagaatcagaagaaattctaaacataaaacgaaatacaaaaaaat 34982391  T
Q  251 gaagtgaaagagaggtgaaatttac 275  Q
     |||| ||||||||||  |||||||    
T  34982390 taagtaaaagagaggtagaatttac 34982366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 21791352 - 21791472
Alignment:
Q  154 cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    |||||||||  ||| |||||| ||| |||| |||||| ||| |||||| ||| |||||||||||||||| |||||| ||||  ||| |||||||||| ||    
T  21791352 cagtaaaatagaaatgcaatt-tttctgtgcagctaaactttattaaa-aattagaatcagaagaacttctaaacatgaaatgaaataaaataaaataaa 21791449  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
     | ||||||||||||||||||||    
T  21791450 tttaaagagaggtgaaatttacc 21791472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 10575380 - 10575447
Alignment:
Q  209 aatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||| |||||| ||||| ||| |||||||||| |||||||| |||| |||||||||||    
T  10575380 aatcagaagaacttctaaacatgaaacgaaataaaataaaataaagtgaaaaagagatgaaatttacc 10575447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 26328853 - 26328955
Alignment:
Q  176 tttttgtgtagctaagcttcatt-aaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataa-aatgaagtgaaagagaggtgaaattt 273  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||| || |||||| ||||  ||| |||| || ||| |||| |||||||||||||||||    
T  26328853 tttttgtgtagctaaacttcattaaaaaaatcagaattagaagaatttctaaacatgaaaagaaataaaaaaagaattaagtaaaagagaggtgaaattt 26328952  T
Q  274 acc 276  Q
    |||    
T  26328953 acc 26328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 9925332 - 9925292
Alignment:
Q  181 gtgtagctaagcttcattaaacaatcagaatcagaagaact 221  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  9925332 gtgtagctaagctttattaaaaaatcagaatcagaagaact 9925292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 5545569 - 5545483
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac-aaaacaaaataaaatgaagtgaaaga 261  Q
    ||||| |||||||||| |||| |||| ||  |||||||||||||||| |||||| ||||| |||  |||| ||||| ||||||||||    
T  5545569 tttttttgtagctaagattcagtaaaaaaatagaatcagaagaacttctaaacatgaaacgaaataaaaaaaaaattaagtgaaaga 5545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 53011975 - 53011896
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa--tcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||| |||||| |||| |||||||||||||||  ||||||||| ||  |||||||||||||||||| |||||| ||||    
T  53011975 agtaaaat-aaaacgtaatt-tttttgtgtagctaaatttcattaaaaaaaatcagaatcagaagaacttctaaacatgaaa 53011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 27632659 - 27632542
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa---tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatg 251  Q
    |||||||| |||||| |||| ||||||||||| ||| |||||||||| ||   |||||||||||||||||| |||||| ||||  ||  |||| |||||     
T  27632659 agtaaaat-aaaacgtaatt-tttttgtgtagttaaacttcattaaaaaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaa-aaaatt 27632563  T
Q  252 aagtgaaagagaggtgaaattta 274  Q
    |||||||  ||||||||||||||    
T  27632562 aagtgaa--agaggtgaaattta 27632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 3748370 - 3748492
Alignment:
Q  155 agtaaaatcaaaacgcaattctttt-tgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaa 253  Q
    |||||||| |||| ||| || |||| |||||||||||||||||||||| | ||| ||||||||||||||||||| | |||| ||||||||||||||| ||    
T  3748370 agtaaaataaaaatgcattttttttgtgtgtagctaagcttcattaaaaagtcaaaatcagaagaacttttaaatatgaaataaaacaaaataaaattaa 3748469  T
Q  254 gtgaaagagaggtgaaatttacc 276  Q
    |||||||||| ||||||||||||    
T  3748470 gtgaaagagatgtgaaatttacc 3748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 30915191 - 30915284
Alignment:
Q  182 tgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttac 275  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||||||| | ||||||||    
T  30915191 tgtagttaagcttcattaaaaaatcagaatcagaagaacttataaacatgaaacaaaataaaataaaattaagtgaaagagagataaaatttac 30915284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 6294496 - 6294394
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaa--tcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattt 273  Q
    ||||| |||||||||||||||||||| ||  ||||||||| |||||||| |||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  6294496 tttttttgtagctaagcttcattaaaaaaaatcagaatcaaaagaacttctaaacatgaaacaaaataaaataaaattatgtgaaagagaggtgaaattt 6294397  T
Q  274 acc 276  Q
    |||    
T  6294396 acc 6294394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 11088811 - 11088710
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataa-aatgaagtgaaagagaggtgaaattta 274  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||| |||||| ||||| ||| |||| || ||| |||||||||||||||||||||||    
T  11088811 tttttgtgtagctaaacttcattaaaaaatcagaattagaagaacttctaaacatgaaacgaaataaaaaaagaattaagtgaaagagaggtgaaattta 11088712  T
Q  275 cc 276  Q
    ||    
T  11088711 cc 11088710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 29308273 - 29308390
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| ||||||||||| ||||||| |||||| ||||||||||| |||| ||| |||||| ||||| ||| | || ||||| |||||    
T  29308273 taaaataaaaacgcaatt-tttttgtgtagttaagctttattaaaaaatcagaatcataagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 29308371  T
Q  257 aaagagaggtgaaatttac 275  Q
    ||||||||||  |||||||    
T  29308372 aaagagaggtagaatttac 29308390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 21946317 - 21946245
Alignment:
Q  203 aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaatttacc 276  Q
    |||||||||||||| |||||||||| | ||||||||||||||| |||| |||||||||||||||| ||||||||    
T  21946317 aatcagaatcagaataacttttaaatatgaaacaaaacaaaat-aaattaagtgaaagagaggtggaatttacc 21946245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 1092847 - 1092952
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtg 256  Q
    |||||| ||||||||||| ||||| ||||||||||||| |||||| ||| ||||||| |||| ||| |||||| ||||| ||| | || ||||| |||||    
T  1092847 taaaataaaaacgcaatt-tttttatgtagctaagctttattaaaaaattagaatcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtg 1092945  T
Q  257 aaagaga 263  Q
    |||||||    
T  1092946 aaagaga 1092952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 350658 - 350555
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcag-aagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaag--agaggtgaaatt 272  Q
    ||||||||||||||| |||||||||| ||| ||||| || |||||||| |||||| ||||| ||| |||| ||||| || ||||||  | ||||||||||    
T  350658 tttttgtgtagctaaacttcattaaaaaattagaattagaaagaacttctaaacatgaaacgaaataaaaaaaaattaaatgaaagatataggtgaaatt 350559  T
Q  273 tacc 276  Q
    ||||    
T  350558 tacc 350555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 1690523 - 1690600
Alignment:
Q  157 taaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac 235  Q
    |||||| |||| |||||| ||||||||||||||| ||| || ||| |||||||||||||| | ||| |||||| |||||    
T  1690523 taaaataaaaatgcaatt-tttttgtgtagctaaactttataaaaaaatcagaatcagaaaagcttctaaacatgaaac 1690600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 19231865 - 19231753
Alignment:
Q  176 tttttgtgtagctaagcttcattaaacaatcagaatcagaagaa---cttttaaacacgaaaca---------aaacaaaataaaatgaagtgaaagaga 263  Q
    ||||||| || ||||||||||||||| ||| |||||||||||||   ||| |||||| ||||||         ||| |||| ||||| ||||||||||||    
T  19231865 tttttgtataactaagcttcattaaaaaataagaatcagaagaagaacttctaaacatgaaacagaatataaaaaaaaaaaaaaaattaagtgaaagaga 19231766  T
Q  264 ggtgaaatttacc 276  Q
    |||||||||||||    
T  19231765 ggtgaaatttacc 19231753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 2618613 - 2618535
Alignment:
Q  155 agtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaaacaa-tcagaatcagaagaacttttaaacacgaaa 234  Q
    |||||||| |||||| |||| ||||||||||| |||  ||||||||| || ||||||| ||||||||||||||||| ||||    
T  2618613 agtaaaat-aaaacgtaatt-tttttgtgtagttaaatttcattaaaaaaatcagaataagaagaacttttaaacatgaaa 2618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 3514702 - 3514770
Alignment:
Q  203 aatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaatgaagtgaaagagaggtgaaattta 274  Q
    ||||||||||||||||||||||||||| ||||  ||  |||| ||||| |||||||  ||||||||||||||    
T  3514702 aatcagaatcagaagaacttttaaacatgaaaggaattaaaa-aaaattaagtgaa--agaggtgaaattta 3514770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 99182 - 99097
Alignment:
Q  151 cctcagtaaaatcaaaacgcaattctttttgt-gtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaac 235  Q
    |||||||||||| |||| |||||| ||||| | |||||||  |||||||||| |||||||||||||||||||| |||||| |||||    
T  99182 cctcagtaaaataaaaatgcaatttttttttttgtagctagccttcattaaaaaatcagaatcagaagaacttctaaacatgaaac 99097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 8246 - 8336
Alignment:
Q  178 tttgtgtagctaagcttcattaaacaatcagaatcagaagaacttttaaacacgaaacaaaacaaa-ataaaatgaagtgaaagagaggtgaaattt 273  Q
    |||||||||||||||||||||||| ||||||||      ||||||| ||||| ||||| ||| ||| | ||||| ||| ||||||||||||||||||    
T  8246 tttgtgtagctaagcttcattaaaaaatcagaa------gaactttcaaacatgaaacgaaataaataaaaaattaagcgaaagagaggtgaaattt 8336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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