View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10168_high_1 (Length: 339)
Name: NF10168_high_1
Description: NF10168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10168_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 45732356 - 45732018
Alignment:
| Q |
1 |
tgtggatttcatcatgaagaaactagtcaccttgaattgctggtggatttctaaataatgattgtagtttatggctcattttcattcatgatcatatatc |
100 |
Q |
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| T |
45732356 |
tgtggatttcatcatgaagaaactagtcaccttgaactgctggtggatttctaaataatgatcgtagtttatggctcattttcgttcatgatcatatatc |
45732257 |
T |
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| Q |
101 |
cttattttgcagggggttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagagtccagg |
200 |
Q |
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| T |
45732256 |
cttattttgcagggggttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagggtccagg |
45732157 |
T |
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| Q |
201 |
tatataactttcatagtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatattcttcac |
300 |
Q |
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| T |
45732156 |
tatataactttcatagtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatattcttcac |
45732057 |
T |
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| Q |
301 |
aaatatatagattgattatacccaacccatccaaaatga |
339 |
Q |
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| T |
45732056 |
aaatatatagattgattatacccaacccatccaaaatga |
45732018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 45737686 - 45737348
Alignment:
| Q |
1 |
tgtggatttcatcatgaagaaactagtcaccttgaattgctggtggatttctaaataatgattgtagtttatggctcattttcattcatgatcatatatc |
100 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| || | |
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| T |
45737686 |
tgtggatttcattatgaaaaaactagtcaccttgaattactggtgaatttgtaaataatgatcatagtttgtggctcattttcattcatgatcatgtagc |
45737587 |
T |
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| Q |
101 |
cttattttgcagggggttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagagtccagg |
200 |
Q |
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| T |
45737586 |
cttattttgcagggggttgagactctacatacaagccatttcattactccagaaaatattgaaaggctaaatcaggcaaaagaagcaaatagggtccagg |
45737487 |
T |
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| Q |
201 |
tatataactttcatagtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatattcttcac |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45737486 |
tatataactttcgtagtactagtagcatatttatgttacattaatcacctaatgtattttttcccttctcctatgatattgaataacttatatttatcac |
45737387 |
T |
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| Q |
301 |
aaatatatagattgattatacccaacccatccaaaatga |
339 |
Q |
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| T |
45737386 |
aaatatatagattgattatacccaaccaatccaaaatga |
45737348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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