View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10168_low_1 (Length: 439)
Name: NF10168_low_1
Description: NF10168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10168_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 21460243 - 21459831
Alignment:
| Q |
16 |
cataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
21460243 |
cataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttggaaggaggattttaccatccc |
21460144 |
T |
|
| Q |
116 |
aaacctgccattgagttctactagataaattatgttcagtgagtcatggaaacaagaaaaatgataaattgaaaaccaaaccataaagctttacactcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21460143 |
aaacctgccattgagttctactagataaattatgttcagtgagtcatggaaacaagaaaaatgataaattgaaaaccaaaccataaagctttacactcat |
21460044 |
T |
|
| Q |
216 |
gcatatagaattgttagatggggtttgaggttcaaactctcaacatgtactattatgtattgtctggtgctacactataagaattcaccttcatatctca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21460043 |
gcatatagaattgttagatggggtttgaggttcaaactctcaacatgtactattatgtattgtctggtgctgcactataagaattcaccttcatatctca |
21459944 |
T |
|
| Q |
316 |
ctcatcgctaaacagcctaacaaccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatcttagtcaatatgttcatgtgttttcctcta |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21459943 |
ctcatcgctaaacaccctaacaaccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatcttagtcaatatgttcatgtgttttcctcta |
21459844 |
T |
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| Q |
416 |
cctcattattctt |
428 |
Q |
| |
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||||||||||||| |
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| T |
21459843 |
cctcattattctt |
21459831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 38913523 - 38913585
Alignment:
| Q |
324 |
taaacagcctaacaaccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatct |
386 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
38913523 |
taaacaccctaacaaccaccccacatatgattcatcagtaacaaccttcaaagcaatttatct |
38913585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 2851563 - 2851485
Alignment:
| Q |
35 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
113 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||| | |||| ||||||| |||| |
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| T |
2851563 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2851485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 2903595 - 2903517
Alignment:
| Q |
35 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
113 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||| | |||| ||||||| |||| |
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| T |
2903595 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2903517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 42949558 - 42949504
Alignment:
| Q |
138 |
agataaattatgttcagtgagtcatggaaacaagaa-aaatgataaattgaaaac |
191 |
Q |
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|||||||| |||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
42949558 |
agataaatcgtgttcagtaagtcatggaaacaagaacaagtgataaattgaaaac |
42949504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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