View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10168_low_10 (Length: 239)
Name: NF10168_low_10
Description: NF10168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10168_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17883040 - 17882817
Alignment:
| Q |
1 |
atcatattaaatgtcataaatgtggcttgtttattatccgagtattatggtctttgagtttgtagctagatgaatataagtgctttcacttcatgttatg |
100 |
Q |
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| T |
17883040 |
atcatattaaatgtcataaatgtggcttgtttattatccgagtattatggtctttgagtttgtaactagatgaatataagtgctttcacttcatgttatg |
17882941 |
T |
|
| Q |
101 |
ctaggttatgttgtggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggttgtatgtttcaatgctcctatgcaaccatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17882940 |
ctaggttatgttgtggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggctgtatgtttcaatgctcctatgcaaccatg |
17882841 |
T |
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| Q |
201 |
ggaaattgcaaatgtaaagaaggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
17882840 |
ggaaattgcaaatgtaaagaaggt |
17882817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 15017650 - 15017546
Alignment:
| Q |
85 |
ttcacttcatgttatgctaggttatgttgtggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggttgtatgtttcaatg |
184 |
Q |
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||||| ||| || ||| ||| ||||||||||||| |||||| | |||| | ||||||| || |||||| | |||||||||||||| ||||||||||| |
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| T |
15017650 |
ttcacatcacgtaatggtagcttatgttgtggtaagttaacctgcgtatcaaatttgtgcaaaatctaactaaactatctacaggttagatgtttcaatg |
15017551 |
T |
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| Q |
185 |
ctcct |
189 |
Q |
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||||| |
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| T |
15017550 |
ctcct |
15017546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 15050385 - 15050280
Alignment:
| Q |
119 |
ggttaactttagtataagatttgtgaaacttctaacaatactatctacaggttgtatgtttcaatgctcctatgcaaccatgggaaattgcaaatgtaaa |
218 |
Q |
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||||||||| ||| |||||||||||||| |||||| | |||||| ||||||| ||||||||| || || || ||| ||| |||||| | ||||||| |
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| T |
15050385 |
ggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaa |
15050286 |
T |
|
| Q |
219 |
gaaggt |
224 |
Q |
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|||||| |
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| T |
15050285 |
gaaggt |
15050280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 36874189 - 36874271
Alignment:
| Q |
116 |
gtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggttgtatgtttcaatgctcctatgcaacca |
198 |
Q |
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|||||||||| | ||||||||||||||||| |||||| | ||||| |||||||| ||||||||| |||||| |||||||| |
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| T |
36874189 |
gtaggttaacatgtgtataagatttgtgaaaaatctaaccaaactatatacaggttagatgtttcaacgctcctctgcaacca |
36874271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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