View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10168_low_3 (Length: 317)
Name: NF10168_low_3
Description: NF10168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10168_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 91 - 307
Target Start/End: Complemental strand, 55978445 - 55978229
Alignment:
| Q |
91 |
ataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
190 |
Q |
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| T |
55978445 |
ataggcattactaccacttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
55978346 |
T |
|
| Q |
191 |
tttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataact |
290 |
Q |
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| T |
55978345 |
tttccatagaagcatttaaactcaaactcgcgtttgtgtactttgcaaaagaaacaccttctttagaatactctttgaaagtgttgtcaacaccataacc |
55978246 |
T |
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| Q |
291 |
cttaaaatcaacctttg |
307 |
Q |
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||||||||||||||||| |
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| T |
55978245 |
cttaaaatcaacctttg |
55978229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 55980094 - 55980013
Alignment:
| Q |
18 |
agaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcatt |
99 |
Q |
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| T |
55980094 |
agaaaaaggtaatttcgcaagaatactctggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcatt |
55980013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 14866191 - 14865902
Alignment:
| Q |
18 |
agaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaac |
117 |
Q |
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| T |
14866191 |
agaaaacggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaac |
14866092 |
T |
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| Q |
118 |
atgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttcatttccatagaagcacttaaactcaaac |
217 |
Q |
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|| || || | |||||||||||| || |||||| || |||| ||||||||||||||| | | | || |||| || || |||||||||||||||| ||| |
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| T |
14866091 |
attttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccactcgcagcatttttgttcactttcacagaagcacttaaactcgaac |
14865992 |
T |
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| Q |
218 |
tcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataactcttaaaatcaacctttg |
307 |
Q |
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| T |
14865991 |
tcacgtttgtgtactttgcaaaagaaacaccttccttcgaatactctttgaaatcatttttaacaccatagcctttaaaaccaacctttg |
14865902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 27079595 - 27079719
Alignment:
| Q |
49 |
ggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaa |
148 |
Q |
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||||||||||||||| ||||||||||| | ||||| ||||||||||| || ||||||| ||||||||| ||||| || ||||||||||| |||| || |
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| T |
27079595 |
ggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaa |
27079694 |
T |
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| Q |
149 |
ccgatgttttgaccaaactaccact |
173 |
Q |
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|| || |||| |||||||| |||| |
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| T |
27079695 |
cccatttttttgccaaactaacact |
27079719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 27065881 - 27065979
Alignment:
| Q |
52 |
aaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaacc |
150 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||| ||| |||||| |||||||| || ||||| ||||||||||| |||| |||| |
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| T |
27065881 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaacc |
27065979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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