View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10168_low_8 (Length: 249)
Name: NF10168_low_8
Description: NF10168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10168_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 54607698 - 54607804
Alignment:
| Q |
1 |
aactaatattggacccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataattaatatttgtgtaaaatta |
100 |
Q |
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| T |
54607698 |
aactaatattgggcccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataattaatatttgtgtaaaatta |
54607797 |
T |
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| Q |
101 |
agaggaa |
107 |
Q |
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||||||| |
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| T |
54607798 |
agaggaa |
54607804 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 54607821 - 54607893
Alignment:
| Q |
158 |
atttgattatatattttgtataatgcatattatgatatcctttttgttgcaaatctatctttacggtttaatattattcttctc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
54607821 |
atttgattatatattttgtataatgcatattatgatat-----------caaatctatctgtacggtttaatattattcttctc |
54607893 |
T |
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