View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10169_low_4 (Length: 249)
Name: NF10169_low_4
Description: NF10169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10169_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 41443750 - 41443910
Alignment:
| Q |
2 |
gatcaactatattaaaaacatggtttactcaaatgacattttagtgagttgtggaaactcaagaagaataaaaaatactannnnnnnaaagaaagaataa |
101 |
Q |
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| T |
41443750 |
gatcaactatattaaaaacatggtttactcaaatgacattttagtgagttgtggaaactcaagaagaataaaaaatactatttttttaaagaaagaataa |
41443849 |
T |
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| Q |
102 |
caaat-aaatattcaaatcttgaaaacaaaatatattatgagctgtggaatattgatgaag |
161 |
Q |
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| T |
41443850 |
caaataaaatattcaaatcttgaaaacaaaatatattatgagctgtggaatattgatgaag |
41443910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 41443952 - 41443991
Alignment:
| Q |
203 |
ttggatgtcgttggttttcactcgttttctctctctgctt |
242 |
Q |
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| T |
41443952 |
ttggatgtcgttggttttcactcgttttctctctctgctt |
41443991 |
T |
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