View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10169_low_6 (Length: 241)
Name: NF10169_low_6
Description: NF10169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10169_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 40164650 - 40164852
Alignment:
| Q |
22 |
ctaacaatttaacaaaagaatattaaattacattatatatttttccagtttgaccctattagtataatattcactactttattaaaaataacaattaaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40164650 |
ctaacaatttaacaaaagaatattaaattacattatatatttttccagtttgaccctattagtataatatccactactttattaaaaataacaattaaca |
40164749 |
T |
|
| Q |
122 |
tttcagtacagtcnnnnnnnnttaacatttcgataatttaataaaatgatcttactcaannnnnnnngtcttgtaaaaaattccagtcaaaaaatattat |
221 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
40164750 |
tttcagtacagtc-aaaaaaattaacatttcgataatttaataaaatgatcttactcaattttttttgtcttgtaaaaaattccagtcttaaaatattat |
40164848 |
T |
|
| Q |
222 |
gtgt |
225 |
Q |
| |
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|||| |
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| T |
40164849 |
gtgt |
40164852 |
T |
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