View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_high_1 (Length: 333)
Name: NF1016_high_1
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45795217 - 45795550
Alignment:
| Q |
1 |
tttatcaaatggtcagcatatattgaaatgaaataaaaaatgtgacactaattaaaggcatattgtttagtgttgaggagatt-aagttaattaccaaaa |
99 |
Q |
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| T |
45795217 |
tttatcaaatggtcagcatatattgaaatgaaataaaaaatgtgacactaattaaaggcatattgtttagtgttgaggagatttaagttaattaccaaaa |
45795316 |
T |
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| Q |
100 |
gtagctgaccgaaagggggttgtaaccttggggtctattgatttgattccagtgacaatggttttcatagggccatcaccatacatgagaacttggtcta |
199 |
Q |
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| T |
45795317 |
gtagctgaccgaaagggggttgtaaccttggggtctattgatttgattccagtgacaatggttttcatagggccatcaccatacatgagaacttggtcta |
45795416 |
T |
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| Q |
200 |
aattcttaggtaccaccactttttcctcatatttacctttggtcacataaataacacatgaattatttctattctttgcacaataatttagtgactcagt |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45795417 |
aattcttaggtaccgccactttttcctcatatttacctttggtcacataaataacacatgaattatttctattctttgcacaataatttagtgactcagt |
45795516 |
T |
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| Q |
300 |
tatggttgagaattggccacttccatcttgagcc |
333 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45795517 |
tatggttgagaattggccacttccatcttgagcc |
45795550 |
T |
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