View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1016_high_3 (Length: 288)

Name: NF1016_high_3
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1016_high_3
NF1016_high_3
[»] chr2 (2 HSPs)
chr2 (6-75)||(19513963-19514031)
chr2 (11-73)||(17104577-17104639)
[»] chr3 (5 HSPs)
chr3 (6-66)||(42347331-42347391)
chr3 (14-73)||(4224833-4224892)
chr3 (18-73)||(25702990-25703045)
chr3 (17-73)||(4221645-4221701)
chr3 (11-75)||(40386308-40386372)
[»] chr7 (3 HSPs)
chr7 (6-73)||(23940550-23940617)
chr7 (1-45)||(24558741-24558785)
chr7 (1-45)||(24622647-24622691)
[»] chr8 (3 HSPs)
chr8 (1-73)||(6863053-6863125)
chr8 (16-52)||(31159158-31159194)
chr8 (9-73)||(34018246-34018310)
[»] chr5 (3 HSPs)
chr5 (17-73)||(25928054-25928110)
chr5 (13-56)||(8223101-8223144)
chr5 (9-73)||(33155610-33155674)
[»] chr1 (3 HSPs)
chr1 (13-45)||(45806905-45806937)
chr1 (6-72)||(39742538-39742604)
chr1 (1-73)||(7890392-7890464)
[»] chr4 (2 HSPs)
chr4 (8-41)||(31977456-31977489)
chr4 (59-92)||(43405245-43405278)
[»] chr6 (1 HSPs)
chr6 (11-39)||(34382901-34382929)


Alignment Details
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 19514031 - 19513963
Alignment:
Q  6 atatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaaaa 75  Q
    |||| ||||||||||||||||||||||||||||||||||  ||  |||||||||| || |||||||||||    
T  19514031 atatttcatttaatttaatgatgagatttattgatctaa-catgaaaattagtttctgtatgatgcaaaa 19513963  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 17104639 - 17104577
Alignment:
Q  11 tcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||||||||| ||||||| |||||||||||| ||| ||| |||||||||| | ||||||||||    
T  17104639 tcatttaattgaatgatgggatttattgatcaaataataaaaattagtttatacatgatgcaa 17104577  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42347391 - 42347331
Alignment:
Q  6 atatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcat 66  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||| ||| ||| ||||||||    
T  42347391 atatctcatataatttaatgatgagatttattgatccaataataaaaactagcttgtgcat 42347331  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 4224892 - 4224833
Alignment:
Q  14 tttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||||||||||||||||||||||||||| |||  || | |||||||||| ||||||||||    
T  4224892 tttaatttaatgatgagatttattgatccaatagtaaatattagtttgtacatgatgcaa 4224833  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25702990 - 25703045
Alignment:
Q  18 atttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||||  |||||||||    
T  25702990 atttaatgatgagatttattgatccaattattaaaactagtttgtatatgatgcaa 25703045  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 4221701 - 4221645
Alignment:
Q  17 aatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    ||||||||| ||||||||||||||| |||  |  |||||||||||||| ||||||||    
T  4221701 aatttaatggtgagatttattgatccaatagtgaaaattagtttgtgcgtgatgcaa 4221645  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 40386372 - 40386308
Alignment:
Q  11 tcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaaaa 75  Q
    ||||||||||||||  ||||||||||||||| |||  | |||| | | |||||||||||||||||    
T  40386372 tcatttaatttaatagtgagatttattgatccaatggtggaaactggcttgtgcatgatgcaaaa 40386308  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 23940617 - 23940550
Alignment:
Q  6 atatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||| ||||||||||||||| ||||||||||||||||||  ||  ||| ||| |||||||||||||||    
T  23940617 atatttcatttaatttaatggtgagatttattgatctaacgatgaaaagtagcttgtgcatgatgcaa 23940550  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24558741 - 24558785
Alignment:
Q  1 acataatatctcatttaatttaatgatgagatttattgatctaat 45  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||    
T  24558741 acatcatatctcatttagtttaatggagagatttattgatctaat 24558785  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24622647 - 24622691
Alignment:
Q  1 acataatatctcatttaatttaatgatgagatttattgatctaat 45  Q
    |||| |||||||||||||||||||||| | |||||||||| ||||    
T  24622647 acatcatatctcatttaatttaatgataaaatttattgatttaat 24622691  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6863125 - 6863053
Alignment:
Q  1 acataatatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||| |||| ||||||||||||||| ||||||||||||||| |||  | |||| ||| ||||| |||||||||    
T  6863125 acatcatatttcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaa 6863053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 31159194 - 31159158
Alignment:
Q  16 taatttaatgatgagatttattgatctaattatagaa 52  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31159194 taatttaatgatgtgatttattgatctaatgatagaa 31159158  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 34018246 - 34018310
Alignment:
Q  9 tctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    ||||||||||||||||| ||  ||||||||||| |||  || ||| ||| |||||||||||||||    
T  34018246 tctcatttaatttaatggtggaatttattgatccaatggtaaaaactagcttgtgcatgatgcaa 34018310  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 25928054 - 25928110
Alignment:
Q  17 aatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    ||||||| ||| |||||||||||||||||  |  |||||||||||||||||||||||    
T  25928054 aatttaacgataagatttattgatctaatggtgaaaattagtttgtgcatgatgcaa 25928110  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 8223144 - 8223101
Alignment:
Q  13 atttaatttaatgatgagatttattgatctaattatagaaatta 56  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  8223144 atttaatttaatgataagatttattgatctaatgataaaaatta 8223101  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 33155610 - 33155674
Alignment:
Q  9 tctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    ||||||||||||||||| || |||||||||||| |||  |  ||| ||| |||||||||||||||    
T  33155610 tctcatttaatttaatggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaa 33155674  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 45806905 - 45806937
Alignment:
Q  13 atttaatttaatgatgagatttattgatctaat 45  Q
    |||||||||||||||||||||||||||||||||    
T  45806905 atttaatttaatgatgagatttattgatctaat 45806937  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 39742604 - 39742538
Alignment:
Q  6 atatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgca 72  Q
    |||| ||||||||||||||| || |||||||||||||||   || ||| |||||||| |||||||||    
T  39742604 atatttcatttaatttaatggtgggatttattgatctaagggtaaaaactagtttgtacatgatgca 39742538  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7890464 - 7890392
Alignment:
Q  1 acataatatctcatttaatttaatgatgagatttattgatctaattatagaaattagtttgtgcatgatgcaa 73  Q
    |||| |||| ||||||||||||||| ||| ||||||||||| |||  |  ||| || ||||||||||||||||    
T  7890464 acatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaa 7890392  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 31977456 - 31977489
Alignment:
Q  8 atctcatttaatttaatgatgagatttattgatc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  31977456 atctcatttgatttaatgatgagatttattgatc 31977489  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 43405245 - 43405278
Alignment:
Q  59 ttgtgcatgatgcaaaatcattttacttgtgtat 92  Q
    ||||||||||||||| ||||||||||||||||||    
T  43405245 ttgtgcatgatgcaagatcattttacttgtgtat 43405278  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 34382929 - 34382901
Alignment:
Q  11 tcatttaatttaatgatgagatttattga 39  Q
    |||||||||||||||||||||||||||||    
T  34382929 tcatttaatttaatgatgagatttattga 34382901  T

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